6OMG

Structure of mouse CD1D- Glc-DAG (sn-1 C18:0, sn-2 C18:1c9)-iNKT TCR Ternary complex

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A (C)	CHIMERIC T CELL ANTIGEN RECEPTOR ALPHA CHAIN VA14,VA24	polymer	209	23055.6	1		Mus musculus (Mouse)
2	B (D)	CHIMERIC T CELL ANTIGEN RECEPTOR BETA CHAIN VB8.2, VB11	polymer	241	27027.0	1		Mus musculus (Mouse)
3	C (A)	Antigen-presenting glycoprotein CD1d1	polymer	285	32632.7	1	UniProt (A0A0R4J090) Pfam (PF16497) Pfam (PF07654) UniProt (by SIFTS) (P11609)	Mus musculus (Mouse)	MCG3074,isoform CRA_a
4	D (B)	Beta-2-microglobulin	polymer	99	11660.4	1	UniProt (P01887) Pfam (PF07654)	Mus musculus (Mouse)
5	E, F (E, F)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		424.4	2	In PDB GlyTouCan (G42666HT)
6	G (G)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose	branched		570.5	1	In PDB GlyTouCan (G21290RB)
7	H, I, L, M (C, A)	GLYCEROL	non-polymer		92.1	4	Chemie (GOL)
8	J, K, O, P, Q (C, D, A)	SODIUM ION	non-polymer		23.0	5	Chemie (NA)
9	N (A)	(2R)-1-(alpha-D-glucopyranosyloxy)-3-(octadecanoyloxy)propan-2-yl (9Z)-octadec-9-enoate	non-polymer		785.1	1	Chemie (MVV)
10	R, S, T, U (C, D, A, B)	water	water		18.0	424	Chemie (HOH)

Sequence modifications

A: 1 - 279 (UniProt: A0A0R4J090)

PDB	External Database	Details
His 280	-	expression tag
His 281	-	expression tag
His 282	-	expression tag
His 283	-	expression tag
His 284	-	expression tag
His 285	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	4
	Total formula weight	94375.6
Branched	Number of molecules	3
	Total formula weight	1419.3
Non-Polymers*	Number of molecules	10
	Total formula weight	1268.5
All*	Total formula weight	97063.4

*Water molecules are not included.