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6OLG

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(AA)
60S ribosomal protein L8polymer25728088.91UniProt (P62917)
Pfam (PF00181)
Pfam (PF03947)
Homo sapiens (Human)Large ribosomal subunit protein uL2
2B
(BA)
40S ribosomal protein SApolymer21524245.71UniProt (P08865)
Pfam (PF00318)
Homo sapiens (Human)37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Colon carcinoma laminin-binding protein,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40,Multidrug resistance-associated protein MGr1-Ag,NEM/1CHD4,Small ribosomal subunit protein uS2
3C
(AB)
60S ribosomal protein L3polymer39445222.91UniProt (P39023)
Pfam (PF00297)
Homo sapiens (Human)HIV-1 TAR RNA-binding protein B,TARBP-B,Large ribosomal subunit protein uL3
4D
(BB)
40S ribosomal protein S3apolymer21224660.01UniProt (P61247)
Pfam (PF01015)
Homo sapiens (Human)Small ribosomal subunit protein eS1,v-fos transformation effector protein,Fte-1
5E
(AC)
60S ribosomal protein L4polymer36341171.51UniProt (P36578)
Pfam (PF00573)
Pfam (PF14374)
Homo sapiens (Human)60S ribosomal protein L1,Large ribosomal subunit protein uL4
6F
(BC)
40S ribosomal protein S2polymer22224575.01UniProt (P15880)
Pfam (PF00333)
Pfam (PF03719)
Homo sapiens (Human)40S ribosomal protein S4,Protein LLRep3,Small ribosomal subunit protein uS5
7G
(A3)
5.8S ribosomal RNApolymer15750449.81Homo sapiens (Human)
8H
(A4)
5S ribosomal RNApolymer11938385.81Homo sapiens (Human)
9I
(AD)
60S ribosomal protein L5polymer29434091.41UniProt (P46777)
Pfam (PF17144)
Pfam (PF14204)
Homo sapiens (Human)Large ribosomal subunit protein uL18
10J
(AE)
60S ribosomal protein L6polymer19422262.41UniProt (Q02878)
Pfam (PF01159)
Homo sapiens (Human)Large ribosomal subunit protein eL6,Neoplasm-related protein C140,Tax-responsive enhancer element-binding protein 107,TaxREB107
11K
(AF)
60S ribosomal protein L7polymer23427733.11UniProt (P18124)
Pfam (PF00327)
Pfam (PF08079)
Homo sapiens (Human)Large ribosomal subunit protein uL30
12L
(AG)
60S ribosomal protein L7apolymer23426724.61UniProt (P62424)
Pfam (PF01248)
Homo sapiens (Human)Large ribosomal subunit protein eL8,PLA-X polypeptide,Surfeit locus protein 3
13M
(AH)
60S ribosomal protein L9polymer19121770.41UniProt (P32969)
Pfam (PF00347)
Homo sapiens (Human)Large ribosomal subunit protein uL6
14N
(AI)
60S ribosomal protein L10polymer21124381.81UniProt (P27635)
Pfam (PF00252)
Homo sapiens (Human)Laminin receptor homolog,Large ribosomal subunit protein uL16,Protein QM,Ribosomal protein L10,Tumor suppressor QM
15O
(AJ)
60S ribosomal protein L11polymer16919270.31UniProt (P62913)
Pfam (PF00281)
Pfam (PF00673)
Homo sapiens (Human)CLL-associated antigen KW-12,Large ribosomal subunit protein uL5
16P
(AK)
60S acidic ribosomal protein P0polymer10912505.81UniProt (P05388)
Pfam (PF00466)
Homo sapiens (Human)60S ribosomal protein L10E,Large ribosomal subunit protein uL10
17Q
(AL)
60S ribosomal protein L13polymer20523574.71UniProt (P26373)
Pfam (PF01294)
Homo sapiens (Human)Breast basic conserved protein 1,Large ribosomal subunit protein eL13
18R
(AM)
60S ribosomal protein L14polymer13916220.31UniProt (P50914)
Pfam (PF01929)
Homo sapiens (Human)CAG-ISL 7,Large ribosomal subunit protein eL14
19S
(AN)
60S ribosomal protein L15polymer20324076.11UniProt (P61313)
Pfam (PF00827)
Homo sapiens (Human)Large ribosomal subunit protein eL15
20T
(AO)
60S ribosomal protein L13apolymer19522820.41UniProt (P40429)
Pfam (PF00572)
Homo sapiens (Human)23 kDa highly basic protein,Large ribosomal subunit protein uL13
21U
(AP)
60S ribosomal protein L17polymer15317757.61UniProt (P18621)
Pfam (PF00237)
Homo sapiens (Human)60S ribosomal protein L23,Large ribosomal subunit protein uL22,PD-1
22V
(AQ)
60S ribosomal protein L18polymer18721556.51UniProt (Q07020)
Pfam (PF17135)
Homo sapiens (Human)Large ribosomal subunit protein eL18
23W
(AR)
60S ribosomal protein L19polymer18121742.11UniProt (P84098)
Pfam (PF01280)
Homo sapiens (Human)Large ribosomal subunit protein eL19
24X
(AS)
60S ribosomal protein L18apolymer17520661.31UniProt (Q02543)
Pfam (PF01775)
Homo sapiens (Human)Large ribosomal subunit protein eL20
25Y
(AT)
60S ribosomal protein L21polymer15718276.51UniProt (P46778)
Pfam (PF01157)
Homo sapiens (Human)Large ribosomal subunit protein eL21
26Z
(AU)
60S ribosomal protein L22polymer9911481.21UniProt (P35268)
Pfam (PF01776)
Homo sapiens (Human)EBER-associated protein,EAP,Epstein-Barr virus small RNA-associated protein,Heparin-binding protein HBp15,Large ribosomal subunit protein eL22
27AA
(AV)
60S ribosomal protein L23polymer12913828.31UniProt (Q9BTQ7)
Pfam (PF00238)
UniProt (by SIFTS) (P62829)
Homo sapiens (Human)
28BA
(AW)
60S ribosomal protein L24polymer12114087.41UniProt (P83731)
Pfam (PF01246)
Homo sapiens (Human)60S ribosomal protein L30,Large ribosomal subunit protein eL24
29CA
(AX)
60S ribosomal protein L23apolymer11713614.01UniProt (P62750)
Pfam (PF03939)
Pfam (PF00276)
Homo sapiens (Human)Large ribosomal subunit protein uL23
30DA
(AY)
60S ribosomal protein L26polymer12715161.91UniProt (P61254)
Pfam (PF16906)
Pfam (PF00467)
Homo sapiens (Human)Large ribosomal subunit protein uL24
31EA
(AZ)
60S ribosomal protein L27polymer13415647.61UniProt (P61353)
Pfam (PF00467)
Pfam (PF01777)
Homo sapiens (Human)Large ribosomal subunit protein eL27
32FA
(Aa)
60S ribosomal protein L27apolymer14716473.31UniProt (P46776)
Pfam (PF00828)
Homo sapiens (Human)Large ribosomal subunit protein uL15
33GA
(Ab)
60S ribosomal protein L29polymer12113965.81UniProt (P47914)
Pfam (PF01779)
Homo sapiens (Human)Cell surface heparin-binding protein HIP,Large ribosomal subunit protein eL29
34HA
(Ac)
60S ribosomal protein L30polymer10311500.61UniProt (P62888)
Pfam (PF01248)
Homo sapiens (Human)Large ribosomal subunit protein eL30
35IA
(Ad)
60S ribosomal protein L31polymer10612506.61UniProt (P62899)
Pfam (PF01198)
Homo sapiens (Human)Large ribosomal subunit protein eL31
36JA
(Ae)
60S ribosomal protein L32polymer12915179.21UniProt (P62910)
Pfam (PF01655)
Homo sapiens (Human)Large ribosomal subunit protein eL32
37KA
(Af)
60S ribosomal protein L35apolymer10912433.51UniProt (P18077)
Pfam (PF01247)
Homo sapiens (Human)Cell growth-inhibiting gene 33 protein,Large ribosomal subunit protein eL33
38LA
(Ag)
60S ribosomal protein L34polymer11412994.61UniProt (P49207)
Pfam (PF01199)
Homo sapiens (Human)Large ribosomal subunit protein eL34
39MA
(Ah)
60S ribosomal protein L35polymer12214462.41UniProt (P42766)
Pfam (PF00831)
Homo sapiens (Human)Large ribosomal subunit protein uL29
40NA
(Ai)
60S ribosomal protein L36polymer9711373.71UniProt (Q9Y3U8)
Pfam (PF01158)
Homo sapiens (Human)Large ribosomal subunit protein eL36
41OA
(Aj)
60S ribosomal protein L37polymer849864.61UniProt (P61927)
Pfam (PF01907)
Homo sapiens (Human)G1.16,Large ribosomal subunit protein eL37
42PA
(Ak)
60S ribosomal protein L38polymer698107.81UniProt (P63173)
Pfam (PF01781)
Homo sapiens (Human)Large ribosomal subunit protein eL38
43QA
(Al)
60S ribosomal protein L39polymer506295.61UniProt (P62891)
Pfam (PF00832)
Homo sapiens (Human)Large ribosomal subunit protein eL39
44RA
(Am)
60S ribosomal protein L40polymer505957.21UniProt (P62987)
Pfam (PF01020)
Homo sapiens (Human)CEP52,Ubiquitin A-52 residue ribosomal protein fusion product 1
45SA
(An)
60S ribosomal protein L41polymer253473.51UniProt (P62945)
Pfam (PF05162)
Homo sapiens (Human)HG12,Large ribosomal subunit protein eL41
46TA
(Ao)
60S ribosomal protein L36apolymer10512345.81UniProt (P83881)
Pfam (PF00935)
Homo sapiens (Human)60S ribosomal protein L44,Cell growth-inhibiting gene 15 protein,Cell migration-inducing gene 6 protein,Large ribosomal subunit protein eL42
47UA
(Ap)
60S ribosomal protein L37apolymer9110168.21UniProt (P61513)
Pfam (PF01780)
Homo sapiens (Human)Large ribosomal subunit protein eL43
48VA
(Aq)
60S ribosomal protein L12polymer13814942.41UniProt (P30050)
Pfam (PF03946)
Pfam (PF00298)
Homo sapiens (Human)Large ribosomal subunit protein uL11
49WA
(At)
60S ribosomal protein L28polymer12213991.41UniProt (P46779)
Pfam (PF01778)
Homo sapiens (Human)Large ribosomal subunit protein eL28
50XA
(Au)
60S ribosomal protein L10apolymer21724879.41UniProt (P62906)
Pfam (PF00687)
Homo sapiens (Human)CSA-19,Large ribosomal subunit protein uL1,Neural precursor cell expressed developmentally down-regulated protein 6,NEDD-6
51YA
(A2)
28S ribosomal RNApolymer36121170164.91Homo sapiens (Human)
52ZA
(B1)
18S ribosomal RNApolymer1708551108.21Homo sapiens (Human)
53AB
(BD)
40S ribosomal protein S3polymer22024357.61UniProt (P23396)
Pfam (PF07650)
Pfam (PF00189)
Homo sapiens (Human)Small ribosomal subunit protein uS3
54BB
(BE)
40S ribosomal protein S4, Y isoform 1polymer25728893.01UniProt (P22090)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Homo sapiens (Human)Small ribosomal subunit protein eS4
55CB
(BF)
40S ribosomal protein S5polymer19021424.81UniProt (P46782)
Pfam (PF00177)
Homo sapiens (Human)Small ribosomal subunit protein uS7
56DB
(BG)
40S ribosomal protein S6polymer23226913.91UniProt (P62753)
Pfam (PF01092)
Homo sapiens (Human)Phosphoprotein NP33,Small ribosomal subunit protein eS6
57EB
(BH)
40S ribosomal protein S7polymer18320990.51UniProt (P62081)
Pfam (PF01251)
Homo sapiens (Human)Small ribosomal subunit protein eS7
58FB
(BI)
40S ribosomal protein S8polymer20724132.21UniProt (P62241)
Pfam (PF01201)
Homo sapiens (Human)Small ribosomal subunit protein eS8
59GB
(BJ)
40S ribosomal protein S9polymer17921222.21UniProt (P46781)
Pfam (PF00163)
Pfam (PF01479)
Homo sapiens (Human)Small ribosomal subunit protein uS4
60HB
(BK)
40S ribosomal protein S10polymer9811774.01UniProt (P46783)
Pfam (PF03501)
Homo sapiens (Human)Small ribosomal subunit protein eS10
61IB
(BL)
40S ribosomal protein S11polymer15317910.21UniProt (P62280)
Pfam (PF16205)
Pfam (PF00366)
Homo sapiens (Human)Small ribosomal subunit protein uS17
62JB
(BM)
40S ribosomal protein S12polymer12013393.71UniProt (P25398)
Pfam (PF01248)
Homo sapiens (Human)Small ribosomal subunit protein eS12
63KB
(BN)
40S ribosomal protein S13polymer14917057.11UniProt (P62277)
Pfam (PF08069)
Pfam (PF00312)
Homo sapiens (Human)Small ribosomal subunit protein uS15
64LB
(BO)
40S ribosomal protein S14polymer13614544.71UniProt (P62263)
Pfam (PF00411)
Homo sapiens (Human)Small ribosomal subunit protein uS11
65MB
(BP)
40S ribosomal protein S15polymer12014273.91UniProt (P62841)
Pfam (PF00203)
Homo sapiens (Human)RIG protein,Small ribosomal subunit protein uS19
66NB
(BQ)
40S ribosomal protein S16polymer13915765.51UniProt (P62249)
Pfam (PF00380)
Homo sapiens (Human)Small ribosomal subunit protein uS9
67OB
(BR)
40S ribosomal protein S17polymer12514447.81UniProt (P08708)
Pfam (PF00833)
Homo sapiens (Human)Small ribosomal subunit protein eS17
68PB
(BS)
40S ribosomal protein S18polymer13916383.11UniProt (P62269)
Pfam (PF00416)
Homo sapiens (Human)Ke-3,Ke3,Small ribosomal subunit protein uS13
69QB
(BT)
40S ribosomal protein S19polymer14315822.21UniProt (P39019)
Pfam (PF01090)
Homo sapiens (Human)Small ribosomal subunit protein eS19
70RB
(BU)
40S ribosomal protein S20polymer9711029.11UniProt (P60866)
Pfam (PF00338)
Homo sapiens (Human)Small ribosomal subunit protein uS10
71SB
(BV)
40S ribosomal protein S21polymer818863.11UniProt (P63220)
Pfam (PF01249)
Homo sapiens (Human)Small ribosomal subunit protein eS21
72TB
(BW)
40S ribosomal protein S15apolymer12914734.41UniProt (P62244)
Pfam (PF00410)
Homo sapiens (Human)Small ribosomal subunit protein uS8
73UB
(BX)
40S ribosomal protein S23polymer13915372.11UniProt (P62266)
Pfam (PF00164)
Homo sapiens (Human)Small ribosomal subunit protein uS12
74VB
(BY)
40S ribosomal protein S24polymer12514489.21UniProt (P62847)
Pfam (PF01282)
Homo sapiens (Human)Small ribosomal subunit protein eS24
75WB
(BZ)
40S ribosomal protein S25polymer869801.71UniProt (P62851)
Pfam (PF03297)
Homo sapiens (Human)Small ribosomal subunit protein eS25
76XB
(Ba)
40S ribosomal protein S26polymer9711087.11UniProt (P62854)
Pfam (PF01283)
Homo sapiens (Human)Small ribosomal subunit protein eS26
77YB
(Bb)
40S ribosomal protein S27polymer809000.61UniProt (P42677)
Pfam (PF01667)
Homo sapiens (Human)Metallopan-stimulin 1,MPS-1,Small ribosomal subunit protein eS27
78ZB
(Bc)
40S ribosomal protein S28polymer627007.11UniProt (P62857)
Pfam (PF01200)
Homo sapiens (Human)Small ribosomal subunit protein eS28
79AC
(Bd)
40S ribosomal protein S29polymer516121.21UniProt (P62273)
Pfam (PF00253)
Homo sapiens (Human)Small ribosomal subunit protein uS14
80BC
(Be)
40S ribosomal protein S30polymer556239.41UniProt (E9PR30)
Pfam (PF04758)
UniProt (by SIFTS) (P62861)
Homo sapiens (Human)
81CC
(Bf)
40S ribosomal protein S27apolymer738645.31UniProt (P62979)
Pfam (PF01599)
Homo sapiens (Human)Ubiquitin carboxyl extension protein 80
82DC
(Bg)
Receptor of activated protein C kinase 1polymer31434726.21UniProt (P63244)
Pfam (PF00400)
Homo sapiens (Human)Cell proliferation-inducing gene 21 protein,Guanine nucleotide-binding protein subunit beta-2-like 1,Guanine nucleotide-binding protein subunit beta-like protein 12.3,Human lung cancer oncogene 7 protein,HLC-7,Receptor for activated C kinase,Small ribosomal subunit protein RACK1
83EC
(Bv)
tRNApolymer7624485.51Homo sapiens (Human)
84FC
(Bx)
mRNApolymer164853.71Homo sapiens (Human)
85GC
(A)
Cadherin-1polymer394040.01UniProt (P12830)Homo sapiens (Human)CAM 120/80,Epithelial cadherin,E-cadherin,Uvomorulin
86AD, AE, AF, AG, AH...
(Aa, A2, B1, Bv, Ae...)
MAGNESIUM IONnon-polymer24.3326Chemie (MG)
87CD, DD, ED, XO, YO
(Aj, Ao, Ap, Ba, Bd)
ZINC IONnon-polymer65.45Chemie (ZN)
88XL
(A2)
N-(3-chloropyridin-2-yl)-N-[(3R)-piperidin-3-yl]-4-(3H-[1,2,3]triazolo[4,5-b]pyridin-3-yl)benzamidenon-polymer433.91Chemie (MVM)
Sequence modifications
A: 1 - 39 (UniProt: P12830)
PDBExternal DatabaseDetails
Ala 6-insertion
Glu 10Val 701conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains85
Total formula weight3198035.9
Non-Polymers*Number of molecules332
Total formula weight8684.4
All*Total formula weight3206720.3
*Water molecules are not included.

239149

PDB entries from 2025-07-23

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