6OJP

Structure of glycolipid alpha-GSA[8,6P] in complex with mouse CD1d

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A	Antigen-presenting glycoprotein CD1d1	polymer	285	32607.6	1	UniProt (A0A0R4J090) Pfam (PF16497) Pfam (PF07654) UniProt (by SIFTS) (P11609) In PDB	Mus musculus (Mouse)	MCG3074,isoform CRA_a
2	B	Beta-2-microglobulin	polymer	99	11660.4	1	UniProt (P01887) Pfam (PF07654) In PDB	Mus musculus (Mouse)
3	C	alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose	branched		1057.0	1	In PDB GlyTouCan (G82348BZ)
4	D	alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		910.8	1	In PDB GlyTouCan (G22768VO)
5	A	2-acetamido-2-deoxy-beta-D-glucopyranose	non-polymer		221.2	2	Chemie (NAG)
6	A	(5R,6S,7S)-5,6-dihydroxy-7-(octanoylamino)-N-(6-phenylhexyl)-8-{[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]oxy}octanamide	non-polymer		654.8	1	Chemie (7LP)
7	A	PALMITIC ACID	non-polymer		256.4	1	Chemie (PLM)
8	A, B	GLYCEROL	non-polymer		92.1	4	Chemie (GOL)
9	A	SULFATE ION	non-polymer		96.1	1	Chemie (SO4)
10		water	water		18.0	84	Chemie (HOH)

Sequence modifications

A: 1 - 279 (UniProt: A0A0R4J090)

PDB	External Database	Details
His 73	Tyr 91	engineered mutation
His 280	-	expression tag
His 281	-	expression tag
His 282	-	expression tag
His 283	-	expression tag
His 284	-	expression tag
His 285	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	2
	Total formula weight	44268.0
Branched	Number of molecules	2
	Total formula weight	1967.8
Non-Polymers*	Number of molecules	9
	Total formula weight	1818.1
All*	Total formula weight	48053.9

*Water molecules are not included.