6OIG
Subunit joining exposes nascent pre-40S rRNA for processing and quality control
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (z) | 60S ribosomal protein L1-A | polymer | 204 | 22974.0 | 1 | UniProt (P0CX43) Pfam (PF00687) | Saccharomyces cerevisiae (Baker's yeast) | L10a,Large ribosomal subunit protein uL1-A |
| 2 | B (A) | 60S ribosomal protein L2-A | polymer | 252 | 27217.3 | 1 | UniProt (P0CX45) Pfam (PF00181) Pfam (PF03947) | Saccharomyces cerevisiae (Baker's yeast) | L5,Large ribosomal subunit protein uL2-A,RP8,YL6 |
| 3 | C (B) | 60S ribosomal protein L3 | polymer | 386 | 43719.6 | 1 | UniProt (P14126) Pfam (PF00297) | Saccharomyces cerevisiae (Baker's yeast) | Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1 |
| 4 | D (C) | 60S ribosomal protein L4-A | polymer | 361 | 39027.9 | 1 | UniProt (P10664) Pfam (PF00573) Pfam (PF14374) | Saccharomyces cerevisiae (Baker's yeast) | L2,Large ribosomal subunit protein uL4-A,RP2,YL2 |
| 5 | E (D) | 60S ribosomal protein L5 | polymer | 296 | 33633.6 | 1 | UniProt (P26321) Pfam (PF17144) Pfam (PF14204) | Saccharomyces cerevisiae (Baker's yeast) | L1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3 |
| 6 | F (E) | 60S ribosomal protein L6-A | polymer | 175 | 19869.4 | 1 | UniProt (Q02326) Pfam (PF01159) | Saccharomyces cerevisiae (Baker's yeast) | L17,Large ribosomal subunit protein eL6-A,RP18,YL16 |
| 7 | G (F) | 60S ribosomal protein L7-A | polymer | 222 | 25240.4 | 1 | UniProt (P05737) Pfam (PF00327) Pfam (PF08079) | Saccharomyces cerevisiae (Baker's yeast) | L6,Large ribosomal subunit protein uL30-A,RP11,YL8 |
| 8 | H (G) | 60S ribosomal protein L8-A | polymer | 233 | 25815.0 | 1 | UniProt (P17076) Pfam (PF01248) | Saccharomyces cerevisiae (Baker's yeast) | L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5 |
| 9 | I (H) | 60S ribosomal protein L9-A | polymer | 191 | 21605.1 | 1 | UniProt (P05738) Pfam (PF00347) | Saccharomyces cerevisiae (Baker's yeast) | L8,Large ribosomal subunit protein uL6-A,RP24,YL11 |
| 10 | J (I) | 60S ribosomal protein L10 | polymer | 220 | 25279.3 | 1 | UniProt (P41805) Pfam (PF00252) | Saccharomyces cerevisiae (Baker's yeast) | L9,Large ribosomal subunit protein uL16,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein |
| 11 | K (J) | 60S ribosomal protein L11-B | polymer | 169 | 19266.1 | 1 | UniProt (Q3E757) Pfam (PF00281) Pfam (PF00673) | Saccharomyces cerevisiae (Baker's yeast) | L16,Large ribosomal subunit protein uL5-B,RP39,YL22 |
| 12 | L (s) | 60S ribosomal protein L12-A | polymer | 155 | 16679.3 | 1 | UniProt (P0CX53) Pfam (PF03946) Pfam (PF00298) | Saccharomyces cerevisiae (Baker's yeast) | L15,Large ribosomal subunit protein uL11-A,YL23 |
| 13 | M (L) | 60S ribosomal protein L13-A | polymer | 193 | 21885.2 | 1 | UniProt (Q12690) Pfam (PF01294) | Saccharomyces cerevisiae (Baker's yeast) | Large ribosomal subunit protein eL13-A |
| 14 | N (M) | 60S ribosomal protein L14-A | polymer | 136 | 14976.8 | 1 | UniProt (P36105) Pfam (PF00467) Pfam (PF01929) | Saccharomyces cerevisiae (Baker's yeast) | Large ribosomal subunit protein eL14-A |
| 15 | O (N) | 60S ribosomal protein L15-A | polymer | 203 | 24351.2 | 1 | UniProt (P05748) Pfam (PF00827) | Saccharomyces cerevisiae (Baker's yeast) | L13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18 |
| 16 | P (O) | 60S ribosomal protein L16-A | polymer | 197 | 22029.0 | 1 | UniProt (P26784) Pfam (PF00572) | Saccharomyces cerevisiae (Baker's yeast) | L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15 |
| 17 | Q (P) | 60S ribosomal protein L17-A | polymer | 183 | 20458.3 | 1 | UniProt (P05740) Pfam (PF00237) | Saccharomyces cerevisiae (Baker's yeast) | L20A,Large ribosomal subunit protein uL22-A,YL17 |
| 18 | R (Q) | 60S ribosomal protein L18-A | polymer | 185 | 20478.1 | 1 | UniProt (P0CX49) Pfam (PF17135) | Saccharomyces cerevisiae (Baker's yeast) | Large ribosomal subunit protein eL18-A,RP28 |
| 19 | S (R) | 60S ribosomal protein L19-A | polymer | 188 | 21631.1 | 1 | UniProt (P0CX82) Pfam (PF01280) | Saccharomyces cerevisiae (Baker's yeast) | L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14 |
| 20 | T (S) | 60S ribosomal protein L20-A | polymer | 172 | 20478.9 | 1 | UniProt (P0CX23) Pfam (PF01775) | Saccharomyces cerevisiae (Baker's yeast) | L18a,Large ribosomal subunit protein eL20-A |
| 21 | U (T) | 60S ribosomal protein L21-A | polymer | 159 | 18148.1 | 1 | UniProt (Q02753) Pfam (PF01157) | Saccharomyces cerevisiae (Baker's yeast) | Large ribosomal subunit protein eL21-A |
| 22 | V (U) | 60S ribosomal protein L22-A | polymer | 100 | 11263.9 | 1 | UniProt (P05749) Pfam (PF01776) | Saccharomyces cerevisiae (Baker's yeast) | L1c,Large ribosomal subunit protein eL22-A,RP4,YL31 |
| 23 | W (V) | 60S ribosomal protein L23-A | polymer | 136 | 14362.8 | 1 | UniProt (P0CX41) Pfam (PF00238) | Saccharomyces cerevisiae (Baker's yeast) | L17a,Large ribosomal subunit protein uL14-A,YL32 |
| 24 | X (W) | 60S ribosomal protein L24-A | polymer | 135 | 15506.2 | 1 | UniProt (P04449) Pfam (PF01246) | Saccharomyces cerevisiae (Baker's yeast) | L30,Large ribosomal subunit protein eL24-A,RP29,YL21 |
| 25 | Y (X) | 60S ribosomal protein L25 | polymer | 121 | 13771.2 | 1 | UniProt (P04456) Pfam (PF03939) Pfam (PF00276) | Saccharomyces cerevisiae (Baker's yeast) | Large ribosomal subunit protein uL23,RP16L,YL25,YP42' |
| 26 | Z (Y) | 60S ribosomal protein L26-A | polymer | 126 | 14134.6 | 1 | UniProt (P05743) Pfam (PF16906) Pfam (PF00467) | Saccharomyces cerevisiae (Baker's yeast) | L33,Large ribosomal subunit protein uL24-A,YL33 |
| 27 | AA (Z) | 60S ribosomal protein L27-A | polymer | 135 | 15437.2 | 1 | UniProt (P0C2H6) Pfam (PF01777) | Saccharomyces cerevisiae (Baker's yeast) | Large ribosomal subunit protein eL27-A |
| 28 | BA (a) | 60S ribosomal protein L28 | polymer | 148 | 16630.5 | 1 | UniProt (P02406) Pfam (PF00828) | Saccharomyces cerevisiae (Baker's yeast) | L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24 |
| 29 | CA (b) | 60S ribosomal protein L29 | polymer | 58 | 6560.7 | 1 | UniProt (P05747) Pfam (PF01779) | Saccharomyces cerevisiae (Baker's yeast) | Large ribosomal subunit protein eL29,YL43 |
| 30 | DA (c) | 60S ribosomal protein L30 | polymer | 97 | 10558.3 | 1 | UniProt (P14120) Pfam (PF01248) | Saccharomyces cerevisiae (Baker's yeast) | L32,Large ribosomal subunit protein eL30,RP73,YL38 |
| 31 | EA (d) | 60S ribosomal protein L31-A | polymer | 109 | 12649.8 | 1 | UniProt (P0C2H8) Pfam (PF01198) | Saccharomyces cerevisiae (Baker's yeast) | L34,Large ribosomal subunit protein eL31-A,YL28 |
| 32 | FA (e) | 60S ribosomal protein L32 | polymer | 127 | 14478.1 | 1 | UniProt (P38061) Pfam (PF01655) | Saccharomyces cerevisiae (Baker's yeast) | Large ribosomal subunit protein eL32 |
| 33 | GA (f) | 60S ribosomal protein L33-A | polymer | 106 | 12045.9 | 1 | UniProt (P05744) Pfam (PF01247) | Saccharomyces cerevisiae (Baker's yeast) | L37,Large ribosomal subunit protein eL33-A,RP47,YL37 |
| 34 | HA (g) | 60S ribosomal protein L34-A | polymer | 112 | 12608.8 | 1 | UniProt (P87262) Pfam (PF01199) | Saccharomyces cerevisiae (Baker's yeast) | Large ribosomal subunit protein eL34-A |
| 35 | IA (h) | 60S ribosomal protein L35-A | polymer | 119 | 13811.4 | 1 | UniProt (P0CX84) Pfam (PF00831) | Saccharomyces cerevisiae (Baker's yeast) | Large ribosomal subunit protein uL29-A |
| 36 | JA (i) | 60S ribosomal protein L36-A | polymer | 99 | 11020.1 | 1 | UniProt (P05745) Pfam (PF01158) | Saccharomyces cerevisiae (Baker's yeast) | L39,Large ribosomal subunit protein eL36-A,YL39 |
| 37 | KA (j) | 60S ribosomal protein L37-A | polymer | 87 | 9746.2 | 1 | UniProt (P49166) Pfam (PF01907) | Saccharomyces cerevisiae (Baker's yeast) | L43,Large ribosomal subunit protein eL37-A,YL35,YP55 |
| 38 | LA (k) | 60S ribosomal protein L38 | polymer | 77 | 8714.4 | 1 | UniProt (P49167) Pfam (PF01781) | Saccharomyces cerevisiae (Baker's yeast) | Large ribosomal subunit protein eL38 |
| 39 | MA (l) | 60S ribosomal protein L39 | polymer | 50 | 6227.4 | 1 | UniProt (P04650) Pfam (PF00832) | Saccharomyces cerevisiae (Baker's yeast) | L46,Large ribosomal subunit protein eL39,YL40 |
| 40 | NA (m) | Ubiquitin-60S ribosomal protein L40 | polymer | 52 | 6032.3 | 1 | UniProt (P0CH08) Pfam (PF01020) | Saccharomyces cerevisiae (Baker's yeast) | |
| 41 | OA (o) | 60S ribosomal protein L42-A | polymer | 105 | 12115.5 | 1 | UniProt (P0CX27) Pfam (PF00935) | Saccharomyces cerevisiae (Baker's yeast) | L41,Large ribosomal subunit protein eL42-A,YL27,YP44 |
| 42 | PA (p) | 60S ribosomal protein L43-A | polymer | 91 | 9981.8 | 1 | UniProt (P0CX25) Pfam (PF01780) | Saccharomyces cerevisiae (Baker's yeast) | L37a,Large ribosomal subunit protein eL43-A,YL35 |
| 43 | QA (q) | 60S acidic ribosomal protein P0,60S acidic ribosomal protein P0,AO, L1OE | polymer | 219 | 23585.3 | 1 | UniProt (P05317) Pfam (PF00466) Pfam (PF17777) | Saccharomyces cerevisiae (Baker's yeast) | A0,L10e,Large ribosomal subunit protein uL10 |
| 44 | RA (5) | 25S ribosomal RNA | polymer | 3394 | 1096842.4 | 1 | Saccharomyces cerevisiae (Baker's yeast) | ||
| 45 | SA (8) | 5.8S ribosomal RNA | polymer | 158 | 50682.9 | 1 | GenBank (1267176496) | Saccharomyces cerevisiae (Baker's yeast) | |
| 46 | TA (7) | 5S ribosomal RNA | polymer | 121 | 38951.1 | 1 | GenBank (1039024045) | Saccharomyces cerevisiae (Baker's yeast) | |
| 47 | UA (x) | P1 | polymer | 47 | 4017.9 | 1 | Saccharomyces cerevisiae (Baker's yeast) | ||
| 48 | VA (y) | P2 | polymer | 46 | 3932.8 | 1 | Saccharomyces cerevisiae (Baker's yeast) |
Sequence modifications
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 48 |
| Total formula weight | 1970433.0 | |
| All* | Total formula weight | 1970433.0 |
