6OHY
Chimpanzee SIV Env trimeric ectodomain.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, C, E (A, C, D) | Envelope glycoprotein gp160 | polymer | 457 | 51708.7 | 3 | UniProt (Q1A234) Pfam (PF00516) | Simian immunodeficiency virus (SIV) | |
2 | B, D, F (B, E, F) | Envelope glycoprotein gp160 | polymer | 151 | 17179.5 | 3 | UniProt (Q1A234) Pfam (PF00517) | Simian immunodeficiency virus (SIV) | |
3 | CA, G, GA, HA, IA... (c, G, g, h, i...) | alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 367.3 | 12 | In PDB GlyTouCan (G86851RC) | |||
4 | AA, DA, EA, FA, H... (a, d, e, f, H...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 24 | In PDB GlyTouCan (G42666HT) | |||
5 | J, LA, X (J, l, X) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 3 | In PDB GlyTouCan (G21290RB) | |||
6 | BA, N, PA (b, N, p) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1235.1 | 3 | In PDB GlyTouCan (G97423PY) | |||
7 | AB, BB, CB, DB, EB... (A, B, C, E, D...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 24 | Chemie (NAG) |
Sequence modifications
A, C, D: 32 - 504 (UniProt: Q1A234)
B, E, F: 515 - 664 (UniProt: Q1A234)
PDB | External Database | Details |
---|---|---|
Lys 171 | Gln 170 | engineered mutation |
Cys 501 | Ser 488 | conflict |
PDB | External Database | Details |
---|---|---|
Pro 559 | Ile 550 | conflict |
Cys 605 | Pro 596 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 206664.5 | |
Branched | Number of molecules | 42 |
Total formula weight | 20010.8 | |
Non-Polymers* | Number of molecules | 24 |
Total formula weight | 5309.0 | |
All* | Total formula weight | 231984.2 |