6OFD
The crystal structure of octadecyloxy(naphthalen-1-yl)methylphosphonic acid in complex with red kidney bean purple acid phosphatase
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, D, C | Fe(3+)-Zn(2+) purple acid phosphatase | polymer | 459 | 52926.4 | 4 | UniProt (P80366) Pfam (PF16656) Pfam (PF00149) Pfam (PF14008) In PDB | Phaseolus vulgaris (Kidney bean) | PAP,Iron(III)-zinc(II) purple acid phosphatase |
| 2 | E, K, M | alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 3 | In PDB GlyTouCan (G11971MR) | |||
| 3 | F, H, J, N | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 732.7 | 4 | In PDB GlyTouCan (G18638YB) | |||
| 4 | G | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1057.0 | 1 | In PDB GlyTouCan (G43648DB) | |||
| 5 | I | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 6 | L | alpha-L-fucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 367.3 | 1 | In PDB GlyTouCan (G80587NA) | |||
| 7 | C, B, A, D | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) | |||
| 8 | C, B, A, D | FE (III) ION | non-polymer | 55.8 | 4 | Chemie (FE) | |||
| 9 | C, B, A, D | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 7 | Chemie (NAG) | |||
| 10 | A | [(S)-(naphthalen-1-yl)(octadecyloxy)methyl]phosphonic acid | non-polymer | 490.7 | 1 | Chemie (MF1) | |||
| 11 | C, A, D | SODIUM ION | non-polymer | 23.0 | 5 | Chemie (NA) | |||
| 12 | B, C, A, D | SULFATE ION | non-polymer | 96.1 | 19 | Chemie (SO4) | |||
| 13 | A, C, B, D | 1,2-ETHANEDIOL | non-polymer | 62.1 | 7 | Chemie (EDO) | |||
| 14 | A, D | TRIETHYLENE GLYCOL | non-polymer | 150.2 | 3 | Chemie (PGE) | |||
| 15 | D | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
| 16 | D | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) | |||
| 17 | water | water | 18.0 | 1699 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 211705.7 | |
| Branched | Number of molecules | 10 |
| Total formula weight | 6653.2 | |
| Non-Polymers* | Number of molecules | 52 |
| Total formula weight | 5476.8 | |
| All* | Total formula weight | 223835.8 |
