6OF5
The crystal structure of dodecyloxy(naphthalen-1-yl)methylphosphonic acid in complex with red kidney bean purple acid phosphatase
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D (A, B, D, C) | Fe(3+)-Zn(2+) purple acid phosphatase | polymer | 426 | 49555.4 | 4 | UniProt (P80366) Pfam (PF16656) Pfam (PF00149) Pfam (PF14008) | Phaseolus vulgaris (Kidney bean) | PAP,Iron(III)-zinc(II) purple acid phosphatase |
| 2 | E, H, K, M (E, H, K, M) | alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 4 | In PDB GlyTouCan (G11971MR) | |||
| 3 | F, I, J, N (F, I, J, N) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 732.7 | 4 | In PDB GlyTouCan (G18638YB) | |||
| 4 | G (G) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1057.0 | 1 | In PDB GlyTouCan (G43648DB) | |||
| 5 | L (L) | alpha-L-fucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 367.3 | 1 | In PDB GlyTouCan (G80587NA) | |||
| 6 | DA, GB, O, QA (B, C, A, D) | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) | |||
| 7 | EA, HB, P, RA (B, C, A, D) | FE (III) ION | non-polymer | 55.8 | 4 | Chemie (FE) | |||
| 8 | FA, IB, JB, Q, SA... (B, C, A, D) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 7 | Chemie (NAG) | |||
| 9 | GA, HA, IA, JA, KA... (B, C, A, D) | SULFATE ION | non-polymer | 96.1 | 19 | Chemie (SO4) | |||
| 10 | OB, PB, V, W, YA (C, A, D) | SODIUM ION | non-polymer | 23.0 | 5 | Chemie (NA) | |||
| 11 | AB, BB, OA, PA, QB... (D, B, C, A) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 14 | Chemie (EDO) | |||
| 12 | AA, BA, DB, EB, FB (A, D) | TRIETHYLENE GLYCOL | non-polymer | 150.2 | 5 | Chemie (PGE) | |||
| 13 | CA (A) | [(R)-{[(2E,4Z,8Z)-dodeca-2,4,8-trien-1-yl]oxy}(naphthalen-1-yl)methyl]phosphonic acid | non-polymer | 400.4 | 1 | Chemie (MFJ) | |||
| 14 | CB (D) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
| 15 | WB, XB, YB, ZB (A, B, D, C) | water | water | 18.0 | 1146 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 198221.6 | |
| Branched | Number of molecules | 10 |
| Total formula weight | 6637.2 | |
| Non-Polymers* | Number of molecules | 60 |
| Total formula weight | 6086.0 | |
| All* | Total formula weight | 210944.8 |
