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6OF5

The crystal structure of dodecyloxy(naphthalen-1-yl)methylphosphonic acid in complex with red kidney bean purple acid phosphatase

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, D, CFe(3+)-Zn(2+) purple acid phosphatasepolymer42649555.44UniProt (P80366)
Pfam (PF16656)
Pfam (PF00149)
Pfam (PF14008)
In PDB
Phaseolus vulgaris (Kidney bean)PAP,Iron(III)-zinc(II) purple acid phosphatase
2E, H, K, Malpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranosebranched570.54In PDB
GlyTouCan (G11971MR)
3F, I, J, Nbeta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranosebranched732.74In PDB
GlyTouCan (G18638YB)
4Galpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranosebranched1057.01In PDB
GlyTouCan (G43648DB)
5Lalpha-L-fucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched367.31In PDB
GlyTouCan (G80587NA)
6B, C, A, DZINC IONnon-polymer65.44Chemie (ZN)
7B, C, A, DFE (III) IONnon-polymer55.84Chemie (FE)
8B, C, A, D2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.27Chemie (NAG)
9B, C, A, DSULFATE IONnon-polymer96.119Chemie (SO4)
10C, A, DSODIUM IONnon-polymer23.05Chemie (NA)
11D, B, C, A1,2-ETHANEDIOLnon-polymer62.114Chemie (EDO)
12A, DTRIETHYLENE GLYCOLnon-polymer150.25Chemie (PGE)
13A[(R)-{[(2E,4Z,8Z)-dodeca-2,4,8-trien-1-yl]oxy}(naphthalen-1-yl)methyl]phosphonic acidnon-polymer400.41Chemie (MFJ)
14DGLYCEROLnon-polymer92.11Chemie (GOL)
15waterwater18.01146Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight198221.6
BranchedNumber of molecules10
Total formula weight6637.2
Non-Polymers*Number of molecules60
Total formula weight6086.0
All*Total formula weight210944.8
*Water molecules are not included.

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PDB entries from 2024-07-24

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