6OA9
Cdc48-Npl4 complex processing poly-ubiquitinated substrate in the presence of ATP
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | Cell division control protein 48 | polymer | 835 | 92105.9 | 6 | UniProt (P25694) Pfam (PF02359) Pfam (PF02933) Pfam (PF00004) Pfam (PF17862) | Saccharomyces cerevisiae (Baker's yeast) | Cell division cycle protein 48, Transitional endoplasmic reticulum ATPase homolog, Cdc48 |
| 2 | G, H, I (K, H, J) | Ubiquitin | polymer | 76 | 8568.8 | 3 | UniProt (P0CH08) Pfam (PF00240) | Saccharomyces cerevisiae (Baker's yeast) | |
| 3 | J (G) | Nuclear protein localization protein 4 | polymer | 580 | 65862.1 | 1 | UniProt (P33755) Pfam (PF05020) Pfam (PF05021) | Saccharomyces cerevisiae (Baker's yeast) | HMG-CoA reductase degradation protein 4, Npl4 |
| 4 | K, L, M, N, O... (A, B, C, D, E...) | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 9 | Chemie (ATP) | |||
| 5 | R (E) | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 1 | Chemie (ADP) | |||
| 6 | U, V (G) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) |
Sequence modifications
A, B, C, D, E, F: 1 - 835 (UniProt: P25694)
| PDB | External Database | Details |
|---|---|---|
| Gln 588 | Glu 588 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 10 |
| Total formula weight | 644203.9 | |
| Non-Polymers* | Number of molecules | 12 |
| Total formula weight | 5122.6 | |
| All* | Total formula weight | 649326.5 |
