6NUH
Non-covalent DNA-protein complex between E. coli YedK and ssDNA containing an abasic site analog
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | SOS response-associated peptidase YedK | polymer | 226 | 25478.8 | 1 | UniProt (P76318) Pfam (PF02586) In PDB | Escherichia coli | |
| 2 | C | DNA (5'-D(*GP*TP*CP*(PDI)P*GP*GP*A)-3') | polymer | 7 | 1987.3 | 1 | Escherichia coli | C3-spacer DNA | |
| 3 | A | 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | non-polymer | 209.2 | 1 | Chemie (BTB) | |||
| 4 | water | water | 18.0 | 209 | Chemie (HOH) |
Sequence modifications
A: 2 - 222 (UniProt: P76318)
| PDB | External Database | Details |
|---|---|---|
| Leu 223 | - | expression tag |
| Glu 224 | - | expression tag |
| Val 225 | - | expression tag |
| Leu 226 | - | expression tag |
| Phe 227 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 27466.1 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 209.2 | |
| All* | Total formula weight | 27675.3 |
