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6NU2

Structural insights into unique features of the human mitochondrial ribosome recycling

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A16S rRNApolymer1472472443.01Homo sapiens (Human)
2Bmt-tRNAValpolymer5617955.71Homo sapiens (Human)
3D39S ribosomal protein L2, mitochondrialpolymer23626258.41UniProt (Q5T653)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Homo sapiens (Human)MRP-L2,Mitochondrial large ribosomal subunit protein uL2m
4E39S ribosomal protein L3, mitochondrialpolymer30434023.11UniProt (P09001)
Pfam (PF00297)
In PDB
Homo sapiens (Human)MRP-L3,Mitochondrial large ribosomal subunit protein uL3m
5F39S ribosomal protein L4, mitochondrialpolymer25028528.11UniProt (Q9BYD3)
Pfam (PF00573)
In PDB
Homo sapiens (Human)MRP-L4,Mitochondrial large ribosomal subunit protein uL4m
6H39S ribosomal protein L9, mitochondrialpolymer9511127.01UniProt (Q9BYD2)
Pfam (PF01281)
In PDB
Homo sapiens (Human)MRP-L9,Mitochondrial large ribosomal subunit protein bL9m
7I39S ribosomal protein L10, mitochondrialpolymer16819398.11UniProt (Q7Z7H8)
Pfam (PF00466)
In PDB
Homo sapiens (Human)MRP-L10,39S ribosomal protein L8,mitochondrial,MRP-L8,Mitochondrial large ribosomal subunit protein uL10m
8J39S ribosomal protein L11, mitochondrialpolymer14015094.81UniProt (Q9Y3B7)
Pfam (PF03946)
Pfam (PF00298)
In PDB
Homo sapiens (Human)MRP-L11,Mitochondrial large ribosomal subunit protein uL11m
9K39S ribosomal protein L13, mitochondrialpolymer17720591.81UniProt (Q9BYD1)
Pfam (PF00572)
In PDB
Homo sapiens (Human)MRP-L13,Mitochondrial large ribosomal subunit protein uL13m
10L39S ribosomal protein L14, mitochondrialpolymer11512710.91UniProt (Q6P1L8)
Pfam (PF00238)
In PDB
Homo sapiens (Human)MRP-L14,39S ribosomal protein L32,mitochondrial,MRP-L32,Mitochondrial large ribosomal subunit protein uL14m
11M39S ribosomal protein L15, mitochondrialpolymer28732704.91UniProt (Q9P015)
Pfam (PF00828)
In PDB
Homo sapiens (Human)MRP-L15,Mitochondrial large ribosomal subunit protein uL15m
12N39S ribosomal protein L16, mitochondrialpolymer20523538.41UniProt (Q9NX20)
Pfam (PF00252)
In PDB
Homo sapiens (Human)MRP-L16,Mitochondrial large ribosomal subunit protein uL16m
13O39S ribosomal protein L17, mitochondrialpolymer15217761.71UniProt (Q9NRX2)
Pfam (PF01196)
In PDB
Homo sapiens (Human)MRP-L17,LYST-interacting protein 2,Mitochondrial large ribosomal subunit protein bL17m
14P39S ribosomal protein L18, mitochondrialpolymer13815993.31UniProt (Q9H0U6)
Pfam (PF00861)
In PDB
Homo sapiens (Human)MRP-L18,Mitochondrial large ribosomal subunit protein uL18m
15Q39S ribosomal protein L19, mitochondrialpolymer21925919.11UniProt (P49406)
Pfam (PF01245)
In PDB
Homo sapiens (Human)MRP-L19,39S ribosomal protein L15,mitochondrial,MRP-L15,Mitochondrial large ribosomal subunit protein bL19m
16R39S ribosomal protein L20, mitochondrialpolymer14016389.31UniProt (Q9BYC9)
Pfam (PF00453)
In PDB
Homo sapiens (Human)MRP-L20,Mitochondrial large ribosomal subunit protein bL20m
17S39S ribosomal protein L21, mitochondrialpolymer15617794.91UniProt (Q7Z2W9)
Pfam (PF00829)
In PDB
Homo sapiens (Human)MRP-L21,Mitochondrial large ribosomal subunit protein bL21m
18T39S ribosomal protein L22, mitochondrialpolymer16619466.81UniProt (Q9NWU5)
Pfam (PF00237)
In PDB
Homo sapiens (Human)MRP-L22,39S ribosomal protein L25,mitochondrial,MRP-L25,Mitochondrial large ribosomal subunit protein uL22m
19U39S ribosomal protein L23, mitochondrialpolymer11113048.11UniProt (Q16540)
Pfam (PF00276)
In PDB
Homo sapiens (Human)MRP-L23,L23 mitochondrial-related protein,Mitochondrial large ribosomal subunit protein uL23m,Ribosomal protein L23-like
20V39S ribosomal protein L24, mitochondrialpolymer20223496.01UniProt (Q96A35)
Pfam (PF00467)
Pfam (PF17136)
In PDB
Homo sapiens (Human)MRP-L24,Mitochondrial large ribosomal subunit protein uL24m
21W39S ribosomal protein L27, mitochondrialpolymer11512699.81UniProt (Q9P0M9)
Pfam (PF01016)
In PDB
Homo sapiens (Human)MRP-L27,Mitochondrial large ribosomal subunit protein bL27m
22X39S ribosomal protein L28, mitochondrialpolymer24328818.31UniProt (Q13084)
Pfam (PF00830)
In PDB
Homo sapiens (Human)MRP-L28,Melanoma antigen p15,Melanoma-associated antigen recognized by T-lymphocytes,Mitochondrial large ribosomal subunit protein bL28m
23Y39S ribosomal protein L47, mitochondrialpolymer17621508.11UniProt (Q9HD33)
Pfam (PF06984)
In PDB
Homo sapiens (Human)MRP-L47,Mitochondrial large ribosomal subunit protein uL29m,Nasopharyngeal carcinoma metastasis-related protein 1
24Z39S ribosomal protein L30, mitochondrialpolymer12013909.41UniProt (Q8TCC3)
Pfam (PF00327)
In PDB
Homo sapiens (Human)MRP-L30,39S ribosomal protein L28,mitochondrial,MRP-L28,Mitochondrial large ribosomal subunit protein uL30m
25039S ribosomal protein L32, mitochondrialpolymer10812606.61UniProt (Q9BYC8)
Pfam (PF01783)
In PDB
Homo sapiens (Human)MRP-L32,Mitochondrial large ribosomal subunit protein bL32m
26139S ribosomal protein L33, mitochondrialpolymer526188.41UniProt (O75394)
Pfam (PF00471)
In PDB
Homo sapiens (Human)MRP-L33,Mitochondrial large ribosomal subunit protein bL33m
27239S ribosomal protein L34, mitochondrialpolymer465368.31UniProt (Q9BQ48)
Pfam (PF00468)
In PDB
Homo sapiens (Human)MRP-L34,Mitochondrial large ribosomal subunit protein bL34m
28339S ribosomal protein L35, mitochondrialpolymer9511788.11UniProt (Q9NZE8)
Pfam (PF01632)
In PDB
Homo sapiens (Human)MRP-L35,Mitochondrial large ribosomal subunit protein bL35m
29439S ribosomal protein L36, mitochondrialpolymer364621.61UniProt (Q9P0J6)
Pfam (PF00444)
In PDB
Homo sapiens (Human)MRP-L36,BRCA1-interacting protein 1,Mitochondrial large ribosomal subunit protein bL36m
30539S ribosomal protein L37, mitochondrialpolymer39245302.01UniProt (Q9BZE1)
Pfam (PF07147)
In PDB
Homo sapiens (Human)MRP-L37,39S ribosomal protein L2,mitochondrial,MRP-L2,Mitochondrial large ribosomal subunit protein mL37
31639S ribosomal protein L38, mitochondrialpolymer35441691.01UniProt (Q96DV4)
Pfam (PF01161)
In PDB
Homo sapiens (Human)MRP-L38,Mitochondrial large ribosomal subunit protein mL38
32739S ribosomal protein L39, mitochondrialpolymer28733289.51UniProt (Q9NYK5)
In PDB
Homo sapiens (Human)MRP-L39,39S ribosomal protein L5,mitochondrial,MRP-L5,Mitochondrial large ribosomal subunit protein mL39
33839S ribosomal protein L40, mitochondrialpolymer9911878.61UniProt (Q9NQ50)
Pfam (PF09812)
In PDB
Homo sapiens (Human)MRP-L40,Mitochondrial large ribosomal subunit protein mL40,Nuclear localization signal-containing protein deleted in velocardiofacial syndrome,Up-regulated in metastasis
34939S ribosomal protein L41, mitochondrialpolymer12314033.01UniProt (Q8IXM3)
Pfam (PF09809)
In PDB
Homo sapiens (Human)MRP-L41,39S ribosomal protein L27 homolog,Bcl-2-interacting mitochondrial ribosomal protein L41,Cell proliferation-inducing gene 3 protein,MRP-L27 homolog,Mitochondrial large ribosomal subunit protein mL41
35a39S ribosomal protein L42, mitochondrialpolymer10812871.51UniProt (Q9Y6G3)
Pfam (PF10210)
In PDB
Homo sapiens (Human)MRP-L42,39S ribosomal protein L31,mitochondrial,MRP-L31,Mitochondrial large ribosomal subunit protein mL42
36b39S ribosomal protein L43, mitochondrialpolymer14816742.01UniProt (Q8N983)
Pfam (PF05047)
In PDB
Homo sapiens (Human)MRP-L43,Mitochondrial large ribosomal subunit protein mL43,Mitochondrial ribosomal protein bMRP36a
37c39S ribosomal protein L44, mitochondrialpolymer28632686.41UniProt (Q9H9J2)
In PDB
Homo sapiens (Human)MRP-L44,Mitochondrial large ribosomal subunit protein mL44
38d39S ribosomal protein L45, mitochondrialpolymer17120094.21UniProt (Q9BRJ2)
Pfam (PF04280)
In PDB
Homo sapiens (Human)MRP-L45,Mitochondrial large ribosomal subunit protein mL45
39e39S ribosomal protein L46, mitochondrialpolymer23727362.11UniProt (Q9H2W6)
Pfam (PF11788)
In PDB
Homo sapiens (Human)MRP-L46,Mitochondrial large ribosomal subunit protein mL46,P2ECSL
40f39S ribosomal protein L48, mitochondrialpolymer14616476.81UniProt (Q96GC5)
Pfam (PF00338)
In PDB
Homo sapiens (Human)MRP-L48,Mitochondrial large ribosomal subunit protein mL48
41g39S ribosomal protein L49, mitochondrialpolymer12915087.21UniProt (Q13405)
Pfam (PF05046)
In PDB
Homo sapiens (Human)MRP-L49,Mitochondrial large ribosomal subunit protein mL49,Neighbor of FAU,NOF,Protein NOF1
42h39S ribosomal protein L50, mitochondrialpolymer10311963.41UniProt (Q8N5N7)
Pfam (PF10501)
In PDB
Homo sapiens (Human)MRP-L50,Mitochondrial large ribosomal subunit protein mL50
43i39S ribosomal protein L51, mitochondrialpolymer9711739.91UniProt (Q4U2R6)
Pfam (PF10244)
In PDB
Homo sapiens (Human)MRP-L51,Mitochondrial large ribosomal subunit protein mL51,bMRP-64,bMRP64
44j39S ribosomal protein L52, mitochondrialpolymer859730.91UniProt (Q86TS9)
Pfam (PF18699)
In PDB
Homo sapiens (Human)MRP-L52,Mitochondrial large ribosomal subunit protein mL52
45k39S ribosomal protein L53, mitochondrialpolymer849386.81UniProt (Q96EL3)
Pfam (PF10780)
In PDB
Homo sapiens (Human)MRP-L53,Mitochondrial large ribosomal subunit protein mL53
46l39S ribosomal protein L54, mitochondrialpolymer233135.61UniProt (Q6P161)
In PDB
Homo sapiens (Human)MRP-L54,Mitochondrial large ribosomal subunit protein mL54
47m39S ribosomal protein L55, mitochondrialpolymer455321.21UniProt (Q7Z7F7)
Pfam (PF09776)
In PDB
Homo sapiens (Human)MRP-L55,Mitochondrial large ribosomal subunit protein bL31m,Mitochondrial large ribosomal subunit protein mL55
48oRibosomal protein 63, mitochondrialpolymer9411316.11UniProt (Q9BQC6)
Pfam (PF14978)
In PDB
Homo sapiens (Human)hMRP63,Mitochondrial large ribosomal subunit protein mL63,Mitochondrial ribosomal protein 63,Mitochondrial ribosomal protein L57
49pPeptidyl-tRNA hydrolase ICT1, mitochondrialpolymer15618024.51UniProt (Q14197)
Pfam (PF00472)
In PDB
Homo sapiens (Human)39S ribosomal protein L58,mitochondrial,MRP-L58,Digestion substraction 1,DS-1,Immature colon carcinoma transcript 1 protein,Mitochondrial large ribosomal subunit protein mL62
50qGrowth arrest and DNA damage-inducible proteins-interacting protein 1polymer12815301.31UniProt (Q8TAE8)
Pfam (PF10147)
In PDB
Homo sapiens (Human)39S ribosomal protein L59,mitochondrial,MRP-L59,CKII beta-associating protein,CR6-interacting factor 1,CRIF1,Mitochondrial large ribosomal subunit protein mL64,Papillomavirus L2-interacting nuclear protein 1,PLINP-1,p53-responsive gene 6 protein
51r39S ribosomal protein S18a, mitochondrialpolymer16218815.01UniProt (Q9NVS2)
Pfam (PF01084)
In PDB
Homo sapiens (Human)S18mt-a,39S ribosomal protein S18-3,mitochondrial,MRP-S18-3,Mitochondrial large ribosomal subunit protein bS18a,Mitochondrial large ribosomal subunit protein mL66
52s39S ribosomal protein S30, mitochondrialpolymer39045204.71UniProt (Q9NP92)
Pfam (PF07147)
In PDB
Homo sapiens (Human)S30mt,Mitochondrial large ribosomal subunit protein mL65,Mitochondrial large ribosomal subunit protein mS30,Programmed cell death protein 9
53tUnknown protein/protein extensionpolymer282401.01Homo sapiens (Human)
54uE-site tRNApolymer2589.41Homo sapiens (Human)
55zRibosome-recycling factor, mitochondrialpolymer20422590.21UniProt (Q96E11)
Pfam (PF01765)
In PDB
Homo sapiens (Human)RRF,Ribosome-releasing factor,mitochondrial
56AA12S rRNApolymer923296318.31Homo sapiens (Human)
57AB28S ribosomal protein S2, mitochondrialpolymer21725127.11UniProt (Q9Y399)
Pfam (PF00318)
In PDB
Homo sapiens (Human)S2mt,Mitochondrial small ribosomal subunit protein uS2m
58AC28S ribosomal protein S24, mitochondrialpolymer13215333.81UniProt (Q96EL2)
Pfam (PF14955)
In PDB
Homo sapiens (Human)S24mt,Mitochondrial small ribosomal subunit protein uS3m,bMRP-47,bMRP47
59AD28S ribosomal protein S5, mitochondrialpolymer34338919.01UniProt (P82675)
Pfam (PF21251)
Pfam (PF00333)
Pfam (PF03719)
In PDB
Homo sapiens (Human)S5mt,Mitochondrial small ribosomal subunit protein uS5m
60AE28S ribosomal protein S6, mitochondrialpolymer12213861.01UniProt (P82932)
Pfam (PF01250)
In PDB
Homo sapiens (Human)S6mt,Mitochondrial small ribosomal subunit protein bS6m
61AF28S ribosomal protein S7, mitochondrialpolymer20824569.81UniProt (Q9Y2R9)
Pfam (PF00177)
In PDB
Homo sapiens (Human)S7mt,Mitochondrial small ribosomal subunit protein uS7m,bMRP-27a,bMRP27a
62AG28S ribosomal protein S9, mitochondrialpolymer32638070.71UniProt (P82933)
Pfam (PF00380)
In PDB
Homo sapiens (Human)S9mt,Mitochondrial small ribosomal subunit protein uS9m
63AH28S ribosomal protein S10, mitochondrialpolymer12214205.41UniProt (P82664)
Pfam (PF00338)
In PDB
Homo sapiens (Human)S10mt,Mitochondrial small ribosomal subunit protein uS10m
64AI28S ribosomal protein S11, mitochondrialpolymer13614408.71UniProt (P82912)
Pfam (PF00411)
In PDB
Homo sapiens (Human)S11mt,Cervical cancer proto-oncogene 2 protein,HCC-2,Mitochondrial small ribosomal subunit protein uS11m
65AJ28S ribosomal protein S12, mitochondrialpolymer10812013.21UniProt (O15235)
Pfam (PF00164)
In PDB
Homo sapiens (Human)S12mt,MT-RPS12,Mitochondrial small ribosomal subunit protein uS12m
66AK28S ribosomal protein S14, mitochondrialpolymer10112282.31UniProt (O60783)
Pfam (PF00253)
In PDB
Homo sapiens (Human)S14mt,Mitochondrial small ribosomal subunit protein uS14m
67AL28S ribosomal protein S15, mitochondrialpolymer16419716.41UniProt (P82914)
Pfam (PF00312)
In PDB
Homo sapiens (Human)S15mt,Mitochondrial small ribosomal subunit protein uS15m
68AM28S ribosomal protein S16, mitochondrialpolymer11613123.41UniProt (Q9Y3D3)
Pfam (PF00886)
In PDB
Homo sapiens (Human)S16mt,Mitochondrial small ribosomal subunit protein bS16m
69AN28S ribosomal protein S17, mitochondrialpolymer10712034.31UniProt (Q9Y2R5)
Pfam (PF00366)
In PDB
Homo sapiens (Human)S17mt,Mitochondrial small ribosomal subunit protein uS17m
70AO28S ribosomal protein S18b, mitochondrialpolymer18521658.61UniProt (Q9Y676)
Pfam (PF01084)
In PDB
Homo sapiens (Human)S18mt-b,28S ribosomal protein S18-2,mitochondrial,MRP-S18-2,Mitochondrial small ribosomal subunit protein bS18b,Mitochondrial small ribosomal subunit protein mS40
71AP28S ribosomal protein S18c, mitochondrialpolymer9611101.21UniProt (Q9Y3D5)
Pfam (PF01084)
In PDB
Homo sapiens (Human)S18mt-c,28S ribosomal protein S18-1,mitochondrial,MRP-S18-1,Mitochondrial small ribosomal subunit protein bS18c,Mitochondrial small ribosomal subunit protein bS18m
72AQ28S ribosomal protein S21, mitochondrialpolymer8610579.41UniProt (P82921)
Pfam (PF01165)
In PDB
Homo sapiens (Human)S21mt,Mitochondrial small ribosomal subunit protein bS21m
73AR28S ribosomal protein S22, mitochondrialpolymer24228555.91UniProt (P82650)
Pfam (PF10245)
In PDB
Homo sapiens (Human)S22mt,Mitochondrial small ribosomal subunit protein mS22
74AS28S ribosomal protein S23, mitochondrialpolymer12614720.81UniProt (Q9Y3D9)
Pfam (PF10484)
In PDB
Homo sapiens (Human)S23mt,Mitochondrial small ribosomal subunit protein mS23
75AT28S ribosomal protein S25, mitochondrialpolymer16219001.11UniProt (P82663)
Pfam (PF05047)
In PDB
Homo sapiens (Human)S25mt,Mitochondrial small ribosomal subunit protein mS25
76AU28S ribosomal protein S26, mitochondrialpolymer17320800.71UniProt (Q9BYN8)
Pfam (PF14943)
In PDB
Homo sapiens (Human)S26mt,28S ribosomal protein S13,mitochondrial,S13mt,Mitochondrial small ribosomal subunit protein mS26
77AV28S ribosomal protein S27, mitochondrialpolymer36542359.01UniProt (Q92552)
Pfam (PF10037)
In PDB
Homo sapiens (Human)S27mt,Mitochondrial ribosomal protein S27,Mitochondrial small ribosomal subunit protein mS27
78AW28S ribosomal protein S28, mitochondrialpolymer9710933.71UniProt (Q9Y2Q9)
Pfam (PF10246)
In PDB
Homo sapiens (Human)S28mt,28S ribosomal protein S35,mitochondrial,S35mt,Mitochondrial small ribosomal subunit protein bS1m
79AX28S ribosomal protein S29, mitochondrialpolymer34839992.81UniProt (P51398)
Pfam (PF10236)
In PDB
Homo sapiens (Human)S29mt,Death-associated protein 3,DAP-3,Ionizing radiation resistance conferring protein,Mitochondrial small ribosomal subunit protein mS29
80AY28S ribosomal protein S31, mitochondrialpolymer10812900.41UniProt (Q92665)
Pfam (PF15433)
In PDB
Homo sapiens (Human)S31mt,Imogen 38,Mitochondrial small ribosomal subunit protein mS31
81AZ28S ribosomal protein S33, mitochondrialpolymer8710538.21UniProt (Q9Y291)
Pfam (PF08293)
In PDB
Homo sapiens (Human)S33mt,Mitochondrial small ribosomal subunit protein mS33
82A028S ribosomal protein S34, mitochondrialpolymer20824594.11UniProt (P82930)
Pfam (PF16053)
In PDB
Homo sapiens (Human)S34mt,Mitochondrial small ribosomal subunit protein mS34
83A128S ribosomal protein S35, mitochondrialpolymer27231362.01UniProt (P82673)
Pfam (PF10213)
In PDB
Homo sapiens (Human)S35mt,28S ribosomal protein S28,mitochondrial,S28mt,Mitochondrial small ribosomal subunit protein mS35
84A2Coiled-coil-helix-coiled-coil-helix domain-containing protein 1polymer11613280.51UniProt (Q96BP2)
Pfam (PF06747)
In PDB
Homo sapiens (Human)28S ribosomal protein S37,mitochondrial,MRP-S37,Mitochondrial small ribosomal subunit protein mS37,Nuclear protein C2360
85A3Aurora kinase A-interacting proteinpolymer698722.61UniProt (Q9NWT8)
Pfam (PF08213)
In PDB
Homo sapiens (Human)AURKA-interacting protein,28S ribosomal protein S38,mitochondrial,MRP-S38,Mitochondrial small ribosomal subunit protein mS38
86A4Pentatricopeptide repeat domain-containing protein 3, mitochondrialpolymer47450095.51UniProt (Q96EY7)
Pfam (PF13812)
In PDB
Homo sapiens (Human)28S ribosomal protein S39,mitochondrial,MRP-S39,Mitochondrial small ribosomal subunit protein mS39,Transformation-related gene 15 protein,TRG-15
87A, AA, M, gMAGNESIUM IONnon-polymer24.3127Chemie (MG)
880, 4, r, AB, AO...ZINC IONnon-polymer65.47Chemie (ZN)
Sequence modifications
A4: 56 - 143 (UniProt: Q96EY7)
A4: 145 - 362 (PDB: 6NU2)
A4: 368 - 380 (PDB: 6NU2)
A4: 386 - 399 (PDB: 6NU2)
A4: 414 - 639 (UniProt: Q96EY7)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains86
Total formula weight2375966.4
Non-Polymers*Number of molecules134
Total formula weight3544.6
All*Total formula weight2379511.0
*Water molecules are not included.

218500

PDB entries from 2024-04-17

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