6NN0
Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with 2'-deoxycytidine and fragment degradation product B9D
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D (A, B, C, D) | ATP-dependent dethiobiotin synthetase BioD | polymer | 233 | 23285.7 | 4 | UniProt (P9WPQ5) Pfam (PF13500) | Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) | DTB synthetase,DTBS,Dethiobiotin synthase |
2 | E, H, I, M, N... (A, B, C, D) | SULFATE ION | non-polymer | 96.1 | 7 | Chemie (SO4) | |||
3 | F, K, O, T (A, B, C, D) | [(1S,2R)-2-(2-hydroxybenzene-1-carbonyl)cyclopentyl]acetic acid | non-polymer | 248.3 | 4 | Chemie (KSJ) | |||
4 | G, L, P, U (A, B, C, D) | [(1R,2S)-2-(2-hydroxybenzene-1-carbonyl)cyclopentyl]acetic acid | non-polymer | 248.3 | 4 | Chemie (KSP) | |||
5 | J, S (B, D) | 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE | non-polymer | 243.2 | 2 | Chemie (CTN) | |||
6 | V, W, X, Y (A, B, C, D) | water | water | 18.0 | 184 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 2 - 226 (UniProt: P9WPQ5)
PDB | External Database | Details |
---|---|---|
His -6 | - | expression tag |
His -5 | - | expression tag |
His -4 | - | expression tag |
His -3 | - | expression tag |
His -2 | - | expression tag |
His -1 | - | expression tag |
Gly 0 | - | expression tag |
Gly 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 93142.7 | |
Non-Polymers* | Number of molecules | 17 |
Total formula weight | 3145.1 | |
All* | Total formula weight | 96287.7 |