6ND9
RHODOCETIN IN COMPLEX WITH THE INTEGRIN ALPHA2-A DOMAIN WITH CALCIUM
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D, G, J, M... (A, D, G, J, M...) | Snaclec rhodocetin subunit gamma | polymer | 135 | 15741.5 | 6 | UniProt (D2YW39) Pfam (PF00059) | Calloselasma rhodostoma (Malayan pit viper) | |
| 2 | B, E, H, K, N... (B, E, H, K, N...) | Snaclec rhodocetin subunit delta | polymer | 124 | 14876.0 | 6 | UniProt (D2YW40) Pfam (PF00059) | Calloselasma rhodostoma (Malayan pit viper) | |
| 3 | C, F, I, L, O... (C, F, I, L, O...) | Integrin alpha-2 | polymer | 217 | 23737.7 | 6 | UniProt (P17301) Pfam (PF00092) | Homo sapiens (Human) | CD49 antigen-like family member B,Collagen receptor,Platelet membrane glycoprotein Ia,GPIa,VLA-2 subunit alpha |
| 4 | AA, CA, FA, GA, IA... (E, G, H, J, L...) | SULFATE ION | non-polymer | 96.1 | 16 | Chemie (SO4) | |||
| 5 | DA, JA, OA, SA, V... (F, I, L, O, C...) | CALCIUM ION | non-polymer | 40.1 | 6 | Chemie (CA) | |||
| 6 | EA, KA, QA, TA, X (F, I, L, O, C) | SODIUM ION | non-polymer | 23.0 | 5 | Chemie (NA) | |||
| 7 | Z (D) | AMMONIUM ION | non-polymer | 18.0 | 1 | Chemie (NH4) | |||
| 8 | BA, HA, MA (E, H, J) | CHLORIDE ION | non-polymer | 35.5 | 3 | Chemie (CL) | |||
| 9 | NA, VA (J, P) | GLYCEROL | non-polymer | 92.1 | 2 | Chemie (GOL) | |||
| 10 | AB, BB, CB, DB, ZA (D, F, K, N, A) | water | water | 18.0 | 10 | Chemie (HOH) |
Sequence modifications
C, F, I, L, O, R: 170 - 366 (UniProt: P17301)
| PDB | External Database | Details |
|---|---|---|
| Met 150 | - | expression tag |
| Gly 151 | - | expression tag |
| Ser 152 | - | expression tag |
| Ser 153 | - | expression tag |
| His 154 | - | expression tag |
| His 155 | - | expression tag |
| His 156 | - | expression tag |
| His 157 | - | expression tag |
| His 158 | - | expression tag |
| His 159 | - | expression tag |
| Ser 160 | - | expression tag |
| Ser 161 | - | expression tag |
| Gly 162 | - | expression tag |
| Leu 163 | - | expression tag |
| Val 164 | - | expression tag |
| Pro 165 | - | expression tag |
| Arg 166 | - | expression tag |
| Gly 167 | - | expression tag |
| Gly 168 | - | expression tag |
| Ser 169 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 18 |
| Total formula weight | 326131.4 | |
| Non-Polymers* | Number of molecules | 33 |
| Total formula weight | 2201.0 | |
| All* | Total formula weight | 328332.4 |
