6NB7
SARS-CoV complex with human neutralizing S230 antibody Fab fragment (state 2)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein | polymer | 1263 | 139816.0 | 3 | UniProt (P59594) Pfam (PF16451) Pfam (PF09408) Pfam (PF01601) In PDB | SARS coronavirus (SARS-CoV) | S glycoprotein,E2,Peplomer protein |
2 | D, G, H | S230 heavy chain | polymer | 127 | 14314.9 | 3 | Homo sapiens (Human) | ||
3 | E, I, L | S230 light chain | polymer | 112 | 12329.7 | 3 | Homo sapiens (Human) | ||
4 | a, c, e, h, F... | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 21 | In PDB GlyTouCan (G15407YE) | |||
5 | d, P, q, R, S... | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 6 | In PDB GlyTouCan (G22768VO) | |||
6 | s, T | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 2 | In PDB GlyTouCan (G81315DD) | |||
7 | b, i, k, o, p... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 6 | In PDB GlyTouCan (G42666HT) | |||
8 | f, g | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 2 | In PDB GlyTouCan (G22573RC) | |||
9 | B, C, A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 16 | Chemie (NAG) |
Sequence modifications
A, B, C: 14 - 1193 (UniProt: P59594)
PDB | External Database | Details |
---|---|---|
Met -18 | - | initiating methionine |
Gly -17 | - | expression tag |
Ile -16 | - | expression tag |
Leu -15 | - | expression tag |
Pro -14 | - | expression tag |
Ser -13 | - | expression tag |
Pro -12 | - | expression tag |
Gly -11 | - | expression tag |
Met -10 | - | expression tag |
Pro -9 | - | expression tag |
Ala -8 | - | expression tag |
Leu -7 | - | expression tag |
Leu -6 | - | expression tag |
Ser -5 | - | expression tag |
Leu -4 | - | expression tag |
Val -3 | - | expression tag |
Ser -2 | - | expression tag |
Leu -1 | - | expression tag |
Leu 0 | - | expression tag |
Ser 1 | - | expression tag |
Val 2 | - | expression tag |
Leu 3 | - | expression tag |
Leu 4 | - | expression tag |
Met 5 | - | expression tag |
Gly 6 | - | expression tag |
Cys 7 | - | expression tag |
Val 8 | - | expression tag |
Ala 9 | - | expression tag |
Glu 10 | - | expression tag |
Thr 11 | - | expression tag |
Gly 12 | - | expression tag |
Thr 13 | - | expression tag |
Asp 77 | Gly 77 | conflict |
Thr 244 | Ile 244 | conflict |
Pro 968 | Lys 968 | conflict |
Pro 969 | Val 969 | conflict |
Gly 1194 | - | expression tag |
Ser 1195 | - | expression tag |
Gly 1196 | - | expression tag |
Arg 1197 | - | expression tag |
Glu 1198 | - | expression tag |
Asn 1199 | - | expression tag |
Leu 1200 | - | expression tag |
Tyr 1201 | - | expression tag |
Phe 1202 | - | expression tag |
Gln 1203 | - | expression tag |
Gly 1204 | - | expression tag |
Gly 1205 | - | expression tag |
Gly 1206 | - | expression tag |
Gly 1207 | - | expression tag |
Ser 1208 | - | expression tag |
Gly 1209 | - | expression tag |
Tyr 1210 | - | expression tag |
Ile 1211 | - | expression tag |
Pro 1212 | - | expression tag |
Glu 1213 | - | expression tag |
Ala 1214 | - | expression tag |
Pro 1215 | - | expression tag |
Arg 1216 | - | expression tag |
Asp 1217 | - | expression tag |
Gly 1218 | - | expression tag |
Gln 1219 | - | expression tag |
Ala 1220 | - | expression tag |
Tyr 1221 | - | expression tag |
Val 1222 | - | expression tag |
Arg 1223 | - | expression tag |
Lys 1224 | - | expression tag |
Asp 1225 | - | expression tag |
Gly 1226 | - | expression tag |
Glu 1227 | - | expression tag |
Trp 1228 | - | expression tag |
Val 1229 | - | expression tag |
Leu 1230 | - | expression tag |
Leu 1231 | - | expression tag |
Ser 1232 | - | expression tag |
Thr 1233 | - | expression tag |
Phe 1234 | - | expression tag |
Leu 1235 | - | expression tag |
Gly 1236 | - | expression tag |
His 1237 | - | expression tag |
His 1238 | - | expression tag |
His 1239 | - | expression tag |
His 1240 | - | expression tag |
His 1241 | - | expression tag |
His 1242 | - | expression tag |
His 1243 | - | expression tag |
His 1244 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 9 |
Total formula weight | 499381.6 | |
Branched | Number of molecules | 37 |
Total formula weight | 23323.5 | |
Non-Polymers* | Number of molecules | 16 |
Total formula weight | 3539.3 | |
All* | Total formula weight | 526244.4 |