6N9E
Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | 1A, 2A | 23S Ribosomal RNA | polymer | 2915 | 948035.6 | 2 | Thermus thermophilus | ||
2 | 1B, 2B | 5S Ribosomal RNA | polymer | 121 | 39188.4 | 2 | Thermus thermophilus | ||
3 | 1D, 2D | 50S Ribosomal Protein L2 | polymer | 276 | 30532.6 | 2 | Pfam (PF00181) Pfam (PF03947) UniProt (by SIFTS) (P60405) In PDB | Thermus thermophilus | |
4 | 1E, 2E | 50S Ribosomal Protein L3 | polymer | 206 | 22450.2 | 2 | Pfam (PF00297) UniProt (by SIFTS) (Q5SHN8) In PDB | Thermus thermophilus | |
5 | 1F, 2F | 50S Ribosomal Protein L4 | polymer | 210 | 23271.9 | 2 | Pfam (PF00573) UniProt (by SIFTS) (Q5SHN9) In PDB | Thermus thermophilus | |
6 | 1G, 2G | 50S Ribosomal Protein L5 | polymer | 182 | 21061.6 | 2 | Pfam (PF00281) Pfam (PF00673) UniProt (by SIFTS) (Q5SHQ0) In PDB | Thermus thermophilus | |
7 | 1H, 2H | 50S Ribosomal Protein L6 | polymer | 180 | 19568.9 | 2 | Pfam (PF00347) UniProt (by SIFTS) (P0DOY8) In PDB | Thermus thermophilus | |
8 | 1I, 2I | 50S Ribosomal Protein L9 | polymer | 148 | 16422.2 | 2 | Pfam (PF01281) Pfam (PF03948) UniProt (by SIFTS) (Q5SLQ1) In PDB | Thermus thermophilus | |
9 | 1N, 2N | 50S Ribosomal Protein L13 | polymer | 140 | 15927.9 | 2 | Pfam (PF00572) UniProt (by SIFTS) (P60488) In PDB | Thermus thermophilus | |
10 | 1O, 2O | 50S Ribosomal Protein L14 | polymer | 122 | 13323.6 | 2 | Pfam (PF00238) UniProt (by SIFTS) (Q5SHP8) In PDB | Thermus thermophilus | |
11 | 1P, 2P | 50S Ribosomal Protein L15 | polymer | 150 | 16319.1 | 2 | Pfam (PF00828) UniProt (by SIFTS) (Q5SHQ7) In PDB | Thermus thermophilus | |
12 | 1Q, 2Q | 50S Ribosomal Protein L16 | polymer | 141 | 15993.9 | 2 | Pfam (PF00252) UniProt (by SIFTS) (P60489) In PDB | Thermus thermophilus | |
13 | 1R, 2R | 50S Ribosomal Protein L17 | polymer | 118 | 13750.1 | 2 | Pfam (PF01196) UniProt (by SIFTS) (Q9Z9H5) In PDB | Thermus thermophilus | |
14 | 1S, 2S | 50S Ribosomal Protein L18 | polymer | 112 | 12639.8 | 2 | Pfam (PF00861) UniProt (by SIFTS) (Q5SHQ4) In PDB | Thermus thermophilus | |
15 | 1T, 2T | 50S Ribosomal Protein L19 | polymer | 146 | 17188.8 | 2 | Pfam (PF01245) UniProt (by SIFTS) (P60490) In PDB | Thermus thermophilus | |
16 | 1U, 2U | 50S Ribosomal Protein L20 | polymer | 118 | 13779.3 | 2 | Pfam (PF00453) UniProt (by SIFTS) (P60491) In PDB | Thermus thermophilus | |
17 | 1V, 2V | 50S Ribosomal Protein L21 | polymer | 101 | 11069.2 | 2 | Pfam (PF00829) UniProt (by SIFTS) (P60492) In PDB | Thermus thermophilus | |
18 | 1W, 2W | 50S Ribosomal Protein L22 | polymer | 113 | 12808.1 | 2 | Pfam (PF00237) UniProt (by SIFTS) (Q5SHP3) In PDB | Thermus thermophilus | |
19 | 1X, 2X | 50S Ribosomal Protein L23 | polymer | 96 | 10759.8 | 2 | Pfam (PF00276) UniProt (by SIFTS) (Q5SHP0) In PDB | Thermus thermophilus | |
20 | 1Y, 2Y | 50S ribosomal protein L24 | polymer | 110 | 12085.6 | 2 | UniProt (Q56435) Pfam (PF00467) Pfam (PF17136) UniProt (by SIFTS) (Q5SHP9) In PDB | Thermus thermophilus | |
21 | 1Z, 2Z | 50S ribosomal protein L25 | polymer | 206 | 23238.6 | 2 | UniProt (Q72IA7) Pfam (PF01386) Pfam (PF14693) UniProt (by SIFTS) (Q5SHZ1) In PDB | Thermus thermophilus | General stress protein CTC |
22 | 10, 20 | 50S ribosomal protein L27 | polymer | 85 | 9529.1 | 2 | UniProt (P60493) Pfam (PF01016) In PDB | Thermus thermophilus | |
23 | 11, 21 | 50S ribosomal protein L28 | polymer | 98 | 11004.2 | 2 | UniProt (P60494) Pfam (PF00830) In PDB | Thermus thermophilus | |
24 | 12, 22 | 50S ribosomal protein L29 | polymer | 72 | 8670.3 | 2 | UniProt (Q72I12) Pfam (PF00831) UniProt (by SIFTS) (Q5SHP6) In PDB | Thermus thermophilus | |
25 | 13, 23 | 50S ribosomal protein L30 | polymer | 60 | 6799.1 | 2 | UniProt (P74909) Pfam (PF00327) UniProt (by SIFTS) (Q5SHQ6) In PDB | Thermus thermophilus | |
26 | 14, 24 | 50S ribosomal protein L31 | polymer | 71 | 8300.5 | 2 | UniProt (Q72JR0) Pfam (PF01197) UniProt (by SIFTS) (Q5SJE1) In PDB | Thermus thermophilus | |
27 | 15, 25 | 50S ribosomal protein L32 | polymer | 60 | 6722.1 | 2 | UniProt (P80339) Pfam (PF01783) In PDB | Thermus thermophilus | |
28 | 16, 26 | 50S ribosomal protein L33 | polymer | 54 | 6632.9 | 2 | UniProt (Q72GW3) Pfam (PF00471) UniProt (by SIFTS) (P35871) In PDB | Thermus thermophilus | |
29 | 17, 27 | 50S ribosomal protein L34 | polymer | 49 | 6132.4 | 2 | UniProt (P80340) Pfam (PF00468) In PDB | Thermus thermophilus | |
30 | 18, 28 | 50S Ribosomal Protein L35 | polymer | 65 | 7506.2 | 2 | Pfam (PF01632) UniProt (by SIFTS) (Q5SKU1) In PDB | Thermus thermophilus | |
31 | 19, 29 | 50S Ribosomal Protein L36 | polymer | 37 | 4435.4 | 2 | Pfam (PF00444) UniProt (by SIFTS) (Q5SHR2) In PDB | Thermus thermophilus | |
32 | 1a, 2a | 16S Ribosomal RNA | polymer | 1521 | 493864.6 | 2 | Thermus thermophilus | ||
33 | 1b, 2b | 30S Ribosomal Protein S2 | polymer | 256 | 29317.7 | 2 | Pfam (PF00318) UniProt (by SIFTS) (P80371) In PDB | Thermus thermophilus | |
34 | 1c, 2c | 30S Ribosomal Protein S3 | polymer | 239 | 26751.1 | 2 | Pfam (PF07650) Pfam (PF00189) UniProt (by SIFTS) (P80372) In PDB | Thermus thermophilus | |
35 | 1d, 2d | 30S Ribosomal Protein S4 | polymer | 209 | 24373.4 | 2 | Pfam (PF00163) Pfam (PF01479) UniProt (by SIFTS) (P80373) In PDB | Thermus thermophilus | |
36 | 1e, 2e | 30S Ribosomal Protein S5 | polymer | 162 | 17583.4 | 2 | Pfam (PF00333) Pfam (PF03719) UniProt (by SIFTS) (Q5SHQ5) In PDB | Thermus thermophilus | |
37 | 1f, 2f | 30S Ribosomal Protein S6 | polymer | 101 | 11988.8 | 2 | Pfam (PF01250) UniProt (by SIFTS) (Q5SLP8) In PDB | Thermus thermophilus | |
38 | 1g, 2g | 30S Ribosomal Protein S7 | polymer | 156 | 18051.0 | 2 | Pfam (PF00177) UniProt (by SIFTS) (P17291) In PDB | Thermus thermophilus | |
39 | 1h, 2h | 30S Ribosomal Protein S8 | polymer | 138 | 15868.6 | 2 | Pfam (PF00410) UniProt (by SIFTS) (P0DOY9) In PDB | Thermus thermophilus | |
40 | 1i, 2i | 30S ribosomal protein S9 | polymer | 128 | 14410.6 | 2 | UniProt (P80374) Pfam (PF00380) In PDB | Thermus thermophilus | |
41 | 1j, 2j | 30S ribosomal protein S10 | polymer | 105 | 11955.0 | 2 | UniProt (P80375) Pfam (PF00338) UniProt (by SIFTS) (Q5SHN7) In PDB | Thermus thermophilus | |
42 | 1k, 2k | 30S ribosomal protein S11 | polymer | 129 | 13737.9 | 2 | UniProt (P62654) Pfam (PF00411) UniProt (by SIFTS) (P80376) In PDB | Thermus thermophilus | |
43 | 1l, 2l | 30S ribosomal protein S12 | polymer | 132 | 14683.5 | 2 | UniProt (P17293) Pfam (PF00164) UniProt (by SIFTS) (Q5SHN3) In PDB | Thermus thermophilus | |
44 | 1m, 2m | 30S ribosomal protein S13 | polymer | 126 | 14338.9 | 2 | UniProt (P62655) Pfam (PF00416) UniProt (by SIFTS) (P80377) In PDB | Thermus thermophilus | |
45 | 1n, 2n | 30S ribosomal protein S14 type Z | polymer | 61 | 7158.7 | 2 | UniProt (P24320) Pfam (PF00253) UniProt (by SIFTS) (P0DOY6) In PDB | Thermus thermophilus | |
46 | 1o, 2o | 30S ribosomal protein S15 | polymer | 89 | 10578.4 | 2 | UniProt (P80378) Pfam (PF00312) UniProt (by SIFTS) (Q5SJ76) In PDB | Thermus thermophilus | |
47 | 1p, 2p | 30S ribosomal protein S16 | polymer | 88 | 10410.0 | 2 | UniProt (P62238) Pfam (PF00886) UniProt (by SIFTS) (Q5SJH3) In PDB | Thermus thermophilus | |
48 | 1q, 2q | 30S ribosomal protein S17 | polymer | 105 | 12325.7 | 2 | UniProt (P0DOY7) Pfam (PF00366) In PDB | Thermus thermophilus | |
49 | 1r, 2r | 30S ribosomal protein S18 | polymer | 88 | 10258.3 | 2 | UniProt (P62659) Pfam (PF01084) UniProt (by SIFTS) (Q5SLQ0) In PDB | Thermus thermophilus | |
50 | 1s, 2s | 30S Ribosomal Protein S19 | polymer | 93 | 10605.5 | 2 | Pfam (PF00203) UniProt (by SIFTS) (Q5SHP2) In PDB | Thermus thermophilus | |
51 | 1t, 2t | 30S Ribosomal Protein S20 | polymer | 106 | 11736.1 | 2 | Pfam (PF01649) UniProt (by SIFTS) (P80380) In PDB | Thermus thermophilus | |
52 | 1u, 2u | 30S ribosomal protein Thx | polymer | 27 | 3350.0 | 2 | UniProt (P62612) Pfam (PF17070) UniProt (by SIFTS) (Q5SIH3) In PDB | Thermus thermophilus | |
53 | 1v, 2v | mRNA | polymer | 24 | 7804.7 | 2 | Enterobacteria phage T4 | ||
54 | 1w, 2w | CC-Pmn | polymer | 3 | 1098.9 | 2 | Escherichia coli | ||
55 | 1x, 2x | P-site tRNA, Deacylated Initiator Methionyl-tRNA | polymer | 77 | 24846.9 | 2 | Escherichia coli | ||
56 | 1a, 2A, 1A, 2E, 2a... | MAGNESIUM ION | non-polymer | 24.3 | 1156 | Chemie (MG) | |||
57 | 29, 2n, 1Y, 2Y, 14... | ZINC ION | non-polymer | 65.4 | 12 | Chemie (ZN) | |||
58 | 2d, 1d | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 2 | Chemie (SF4) | |||
59 | water | water | 18.0 | 125 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 110 |
Total formula weight | 4404489.9 | |
Non-Polymers* | Number of molecules | 1170 |
Total formula weight | 29584.8 | |
All* | Total formula weight | 4434074.7 |