6N1B
Crystal structure of an N-acetylgalactosamine deacetylase from F. plautii in complex with blood group B trisaccharide
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Carbohydrate-binding protein | polymer | 503 | 55804.8 | 1 | UniProt (A0A1C7FP65) Pfam (PF02368) UniProt (by SIFTS) (G9YSP4) In PDB | Flavonifractor plautii | N-acetylgalactosamine deacetylase |
2 | B | alpha-L-fucopyranose-(1-2)-[alpha-D-galactopyranose-(1-3)]beta-D-galactopyranose | branched | 488.4 | 1 | In PDB GlyTouCan (G47548GA) | |||
3 | A | CALCIUM ION | non-polymer | 40.1 | 4 | Chemie (CA) | |||
4 | A | GLYCEROL | non-polymer | 92.1 | 3 | Chemie (GOL) | |||
5 | water | water | 18.0 | 359 | Chemie (HOH) |
Sequence modifications
A: 2 - 483 (UniProt: A0A1C7FP65)
PDB | External Database | Details |
---|---|---|
Met -19 | - | expression tag |
Gly -18 | - | expression tag |
Ser -17 | - | expression tag |
Ser -16 | - | expression tag |
His -15 | - | expression tag |
His -14 | - | expression tag |
His -13 | - | expression tag |
His -12 | - | expression tag |
His -11 | - | expression tag |
His -10 | - | expression tag |
Ser -9 | - | expression tag |
Ser -8 | - | expression tag |
Gly -7 | - | expression tag |
Leu -6 | - | expression tag |
Val -5 | - | expression tag |
Pro -4 | - | expression tag |
Arg -3 | - | expression tag |
Gly -2 | - | expression tag |
Ser -1 | - | expression tag |
His 0 | - | expression tag |
Met 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 1 |
Total formula weight | 55804.8 | |
Branched | Number of molecules | 1 |
Total formula weight | 488.4 | |
Non-Polymers* | Number of molecules | 7 |
Total formula weight | 436.6 | |
All* | Total formula weight | 56729.9 |