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6MYY

Germline VRC01 antibody recognition of a modified clade C HIV-1 envelope trimer, 3 Fabs bound, sharpened map

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, D, G
(A, B, E)
426c DS-SOSIP D3polymer62670243.83Pfam (PF00516)
Pfam (PF00517)
UniProt (by SIFTS) (Q2N0S9)
UniProt (by SIFTS) (M4Q8P8)
Human immunodeficiency virus 1 (HIV-1)
2B, E, H
(L, C, F)
VRC01GL light chainpolymer22925008.93UniProt (Q6PJF2)
Pfam (PF07686)
Pfam (PF07654)
Homo sapiens (Human)
3C, F, I
(H, D, G)
VRC01GL heavy chainpolymer23325334.33UniProt (S6C4S0)
Pfam (PF07686)
Pfam (PF07654)
Homo sapiens (Human)
4GA, IA, J, JA, K...
(g, i, I, j, J...)
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched424.418In PDB
GlyTouCan (G42666HT)
5L, NA, Z
(K, n, Z)
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched910.83In PDB
GlyTouCan (G22768VO)
6AA, M, OA
(a, M, o)
alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched1073.03In PDB
GlyTouCan (G09724ZC)
7BA, DA, EA, N, P...
(b, d, e, N, P...)
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched586.59In PDB
GlyTouCan (G15407YE)
8CA, O, QA
(c, O, q)
alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched1235.13In PDB
GlyTouCan (G07617FP)
9FA, R, TA
(f, R, t)
alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched748.73In PDB
GlyTouCan (G81315DD)
10HA, T, VA
(h, T, v)
alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched910.83In PDB
GlyTouCan (G42227JK)
11AB, BB, CB, DB, EB...
(A, B, E)
2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.212Chemie (NAG)
Sequence modifications
L, C, F: -18 - 107 (PDB: 6MYY)
L, C, F: 108 - 216 (UniProt: Q6PJF2)
H, D, G: 1 - 102 (PDB: 6MYY)
H, D, G: 103 - 219 (UniProt: S6C4S0)
PDBExternal DatabaseDetails
His 220-expression tag
His 221-expression tag
His 222-expression tag
His 223-expression tag
His 224-expression tag
His 225-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains9
Total formula weight361761.1
BranchedNumber of molecules42
Total formula weight27553.3
Non-Polymers*Number of molecules12
Total formula weight2654.5
All*Total formula weight391968.9
*Water molecules are not included.

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PDB entries from 2025-07-09

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