6MTD
Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (5) | 28S rRNA | polymer | 3597 | 1167366.1 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 2 | B (7) | 5S rRNA | polymer | 120 | 38691.9 | 1 | GenBank (39) | Oryctolagus cuniculus (Rabbit) | |
| 3 | C (8) | 5.8S rRNA | polymer | 151 | 48559.7 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 4 | D (A) | uL2 | polymer | 248 | 26998.6 | 1 | UniProt (G1TT27) Pfam (PF00181) Pfam (PF03947) | Oryctolagus cuniculus (Rabbit) | |
| 5 | E (B) | uL3 | polymer | 394 | 45119.8 | 1 | UniProt (G1TL06) Pfam (PF00297) | Oryctolagus cuniculus (Rabbit) | |
| 6 | F (C) | uL4 | polymer | 362 | 41114.4 | 1 | UniProt (G1SVW5) Pfam (PF00573) Pfam (PF14374) | Oryctolagus cuniculus (Rabbit) | |
| 7 | G (D) | uL18 | polymer | 293 | 34077.4 | 1 | UniProt (G1SYJ6) Pfam (PF14204) Pfam (PF17144) UniProt (by SIFTS) (P19949) | Oryctolagus cuniculus (Rabbit) | |
| 8 | H (E) | eL6 | polymer | 291 | 33028.3 | 1 | UniProt (G1SKF7) Pfam (PF03868) Pfam (PF01159) | Oryctolagus cuniculus (Rabbit) | |
| 9 | I (F) | uL30 | polymer | 225 | 26658.8 | 1 | UniProt (G1SV32) Pfam (PF08079) Pfam (PF00327) | Oryctolagus cuniculus (Rabbit) | |
| 10 | J (G) | eL8 | polymer | 319 | 36221.5 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 11 | K (H) | uL6 | polymer | 190 | 21627.2 | 1 | UniProt (G1TX33) Pfam (PF00347) UniProt (by SIFTS) (G1SWI6) | Oryctolagus cuniculus (Rabbit) | |
| 12 | L (I) | uL16 | polymer | 214 | 24643.1 | 1 | UniProt (B7NZQ2) Pfam (PF00252) | Oryctolagus cuniculus (Rabbit) | |
| 13 | M (J) | uL5 | polymer | 170 | 19399.5 | 1 | UniProt (G1TUB8) Pfam (PF00281) Pfam (PF00673) | Oryctolagus cuniculus (Rabbit) | |
| 14 | N (L) | eL13 | polymer | 210 | 24200.5 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 15 | O (M) | eL14 | polymer | 138 | 16217.4 | 1 | UniProt (U3KNW6) Pfam (PF01929) UniProt (by SIFTS) (G1SZ12) | Oryctolagus cuniculus (Rabbit) | |
| 16 | P (N) | eL15 | polymer | 203 | 24076.1 | 1 | UniProt (G1T0C1) Pfam (PF00827) | Oryctolagus cuniculus (Rabbit) | |
| 17 | Q (O) | uL13 | polymer | 199 | 23144.9 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 18 | R (P) | uL22 | polymer | 153 | 17758.7 | 1 | UniProt (G1SCJ6) Pfam (PF00237) | Oryctolagus cuniculus (Rabbit) | |
| 19 | S (Q) | eL18 | polymer | 187 | 21568.5 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 20 | T (R) | eL19 | polymer | 180 | 21613.0 | 1 | UniProt (Q3T0W9) Pfam (PF01280) Pfam (PF25476) | Oryctolagus cuniculus (Rabbit) | |
| 21 | U (S) | eL20 | polymer | 176 | 20827.6 | 1 | UniProt (A0A287APR1) Pfam (PF01775) | Oryctolagus cuniculus (Rabbit) | |
| 22 | V (T) | eL21 | polymer | 159 | 18478.8 | 1 | UniProt (G1SHQ2) Pfam (PF01157) | Oryctolagus cuniculus (Rabbit) | |
| 23 | W (U) | eL22 | polymer | 99 | 11495.3 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 24 | X (V) | uL14 | polymer | 131 | 13972.4 | 1 | UniProt (G1T6D1) Pfam (PF00238) | Oryctolagus cuniculus (Rabbit) | |
| 25 | Y (W) | eL24 | polymer | 157 | 17825.1 | 1 | UniProt (G1SE28) Pfam (PF01246) | Oryctolagus cuniculus (Rabbit) | |
| 26 | Z (X) | uL23 | polymer | 118 | 13727.2 | 1 | UniProt (Q24JY1) Pfam (PF03939) Pfam (PF00276) | Oryctolagus cuniculus (Rabbit) | |
| 27 | AA (Y) | uL24 | polymer | 134 | 15891.8 | 1 | UniProt (G1SQH0) Pfam (PF16906) Pfam (PF00467) | Oryctolagus cuniculus (Rabbit) | |
| 28 | BA (Z) | eL27 | polymer | 135 | 15704.6 | 1 | UniProt (G1TXF6) Pfam (PF00467) Pfam (PF01777) | Oryctolagus cuniculus (Rabbit) | |
| 29 | CA (a) | uL15 | polymer | 147 | 16489.4 | 1 | UniProt (G1SNY0) Pfam (PF00828) | Oryctolagus cuniculus (Rabbit) | |
| 30 | DA (b) | eL29 | polymer | 245 | 26708.7 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 31 | EA (c) | eL30 | polymer | 98 | 10914.8 | 1 | UniProt (G1TDL2) Pfam (PF01248) | Oryctolagus cuniculus (Rabbit) | |
| 32 | FA (d) | eL31 | polymer | 107 | 12635.7 | 1 | UniProt (G1SHG0) Pfam (PF01198) | Oryctolagus cuniculus (Rabbit) | |
| 33 | GA (e) | eL32 | polymer | 128 | 15022.0 | 1 | UniProt (G1U437) Pfam (PF01655) UniProt (by SIFTS) (G1TUN8) | Oryctolagus cuniculus (Rabbit) | |
| 34 | HA (f) | eL33 | polymer | 109 | 12449.6 | 1 | UniProt (G1SF08) Pfam (PF01247) | Oryctolagus cuniculus (Rabbit) | |
| 35 | IA (g) | eL34 | polymer | 114 | 12994.6 | 1 | UniProt (P49207) Pfam (PF01199) | Oryctolagus cuniculus (Rabbit) | Large ribosomal subunit protein eL34 |
| 36 | JA (h) | uL29 | polymer | 122 | 14435.4 | 1 | UniProt (G1SIT5) Pfam (PF00831) | Oryctolagus cuniculus (Rabbit) | |
| 37 | KA (i) | eL36 | polymer | 102 | 11888.4 | 1 | UniProt (G1TTQ5) Pfam (PF01158) | Oryctolagus cuniculus (Rabbit) | |
| 38 | LA (j) | eL37 | polymer | 86 | 10090.9 | 1 | UniProt (U3KPD5) Pfam (PF01907) | Oryctolagus cuniculus (Rabbit) | |
| 39 | MA (k) | eL38 | polymer | 69 | 8107.8 | 1 | UniProt (Q32PB9) Pfam (PF01781) | Oryctolagus cuniculus (Rabbit) | |
| 40 | NA (l) | eL39 | polymer | 50 | 6324.6 | 1 | UniProt (G1TTN1) Pfam (PF00832) | Oryctolagus cuniculus (Rabbit) | |
| 41 | OA (m) | eL40 | polymer | 52 | 6212.6 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 42 | PA (n) | eL41 | polymer | 25 | 3473.5 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 43 | QA (o) | eL42 | polymer | 103 | 12070.5 | 1 | UniProt (G1T040) Pfam (PF00935) | Oryctolagus cuniculus (Rabbit) | |
| 44 | RA (p) | eL43 | polymer | 91 | 10168.2 | 1 | UniProt (G1SY53) Pfam (PF01780) | Oryctolagus cuniculus (Rabbit) | |
| 45 | SA (r) | el28 | polymer | 124 | 14220.7 | 1 | UniProt (G1U7L1) Pfam (PF01778) | Oryctolagus cuniculus (Rabbit) | |
| 46 | TA (s) | uL10 | polymer | 196 | 21521.1 | 1 | UniProt (Q29214) Pfam (PF00466) Pfam (PF17777) | Oryctolagus cuniculus (Rabbit) | 60S ribosomal protein L10E |
| 47 | UA (t) | eL11 | polymer | 153 | 16561.1 | 1 | UniProt (G1SMR7) Pfam (PF03946) Pfam (PF00298) | Oryctolagus cuniculus (Rabbit) | |
| 48 | VA (u) | uL1 | polymer | 206 | 23599.9 | 1 | UniProt (G1SKZ8) Pfam (PF00687) | Oryctolagus cuniculus (Rabbit) | |
| 49 | WA (v) | eEF2 | polymer | 839 | 93391.0 | 1 | Oryctolagus cuniculus (Rabbit) | EF-2 | |
| 50 | XA (w) | SERBP1 | polymer | 26 | 3083.3 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 51 | YA (9) | 18S rRNA | polymer | 1698 | 548241.4 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 52 | ZA (AA) | uS2 | polymer | 217 | 24361.9 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 53 | AB (BB) | eS1 | polymer | 213 | 24759.1 | 1 | UniProt (G1SS70) Pfam (PF01015) | Oryctolagus cuniculus (Rabbit) | |
| 54 | BB (CC) | uS5 | polymer | 221 | 24441.8 | 1 | UniProt (O18789) Pfam (PF00333) Pfam (PF03719) | Oryctolagus cuniculus (Rabbit) | |
| 55 | CB (DD) | uS3 | polymer | 228 | 25215.6 | 1 | UniProt (E2RH47) Pfam (PF07650) Pfam (PF00189) | Oryctolagus cuniculus (Rabbit) | |
| 56 | DB (EE) | eS4 | polymer | 262 | 29523.7 | 1 | UniProt (Q76N24) | Oryctolagus cuniculus (Rabbit) | |
| 57 | EB (FF) | uS7 | polymer | 204 | 22913.5 | 1 | UniProt (G1TFM5) Pfam (PF00177) | Oryctolagus cuniculus (Rabbit) | |
| 58 | FB (GG) | eS6 | polymer | 237 | 27471.5 | 1 | UniProt (G1TM55) Pfam (PF01092) | Oryctolagus cuniculus (Rabbit) | |
| 59 | GB (HH) | eS7 | polymer | 194 | 22168.9 | 1 | UniProt (G1SVB0) Pfam (PF01251) | Oryctolagus cuniculus (Rabbit) | |
| 60 | HB (II) | eS8 | polymer | 206 | 24003.0 | 1 | UniProt (Q5E958) Pfam (PF01201) | Oryctolagus cuniculus (Rabbit) | |
| 61 | IB (JJ) | uS4 | polymer | 185 | 21649.6 | 1 | UniProt (B7NZS8) Pfam (PF00163) Pfam (PF01479) | Oryctolagus cuniculus (Rabbit) | |
| 62 | JB (KK) | eS10 | polymer | 96 | 11529.7 | 1 | UniProt (G1TPV3) Pfam (PF03501) | Oryctolagus cuniculus (Rabbit) | |
| 63 | KB (LL) | uS17 | polymer | 158 | 18468.8 | 1 | UniProt (G1TRM4) Pfam (PF16205) Pfam (PF00366) | Oryctolagus cuniculus (Rabbit) | |
| 64 | LB (MM) | eS12 | polymer | 117 | 13048.2 | 1 | UniProt (G1SFR8) Pfam (PF01248) | Oryctolagus cuniculus (Rabbit) | |
| 65 | MB (NN) | uS15 | polymer | 149 | 17057.1 | 1 | UniProt (G1SP51) Pfam (PF08069) Pfam (PF00312) | Oryctolagus cuniculus (Rabbit) | |
| 66 | NB (OO) | uS11 | polymer | 136 | 14544.7 | 1 | UniProt (P13471) Pfam (PF00411) | Oryctolagus cuniculus (Rabbit) | |
| 67 | OB (PP) | uS19 | polymer | 120 | 14246.9 | 1 | UniProt (G1U0Q2) Pfam (PF00203) | Oryctolagus cuniculus (Rabbit) | |
| 68 | PB (QQ) | uS9 | polymer | 142 | 16032.8 | 1 | UniProt (Q3T0X6) Pfam (PF00380) | Oryctolagus cuniculus (Rabbit) | |
| 69 | QB (RR) | eS17 | polymer | 132 | 15250.7 | 1 | UniProt (G1TU13) Pfam (PF00833) | Oryctolagus cuniculus (Rabbit) | |
| 70 | RB (SS) | uS13 | polymer | 144 | 16898.6 | 1 | UniProt (G1TPG3) Pfam (PF00416) | Oryctolagus cuniculus (Rabbit) | |
| 71 | SB (TT) | eS19 | polymer | 141 | 15611.0 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 72 | TB (UU) | uS10 | polymer | 100 | 11395.5 | 1 | UniProt (Q3ZBH8) Pfam (PF00338) | Oryctolagus cuniculus (Rabbit) | |
| 73 | UB (VV) | eS21 | polymer | 83 | 9124.4 | 1 | UniProt (Q32PB8) Pfam (PF01249) | Oryctolagus cuniculus (Rabbit) | |
| 74 | VB (WW) | uS8 | polymer | 129 | 14734.4 | 1 | UniProt (G1TG89) Pfam (PF00410) | Oryctolagus cuniculus (Rabbit) | |
| 75 | WB (XX) | uS12 | polymer | 141 | 15626.4 | 1 | UniProt (Q3T199) Pfam (PF00164) | Oryctolagus cuniculus (Rabbit) | |
| 76 | XB (YY) | eS24 | polymer | 124 | 14432.1 | 1 | UniProt (P62847) Pfam (PF01282) | Oryctolagus cuniculus (Rabbit) | Small ribosomal subunit protein eS24 |
| 77 | YB (ZZ) | eS25 | polymer | 75 | 8526.1 | 1 | UniProt (G1TDB3) Pfam (PF03297) | Oryctolagus cuniculus (Rabbit) | |
| 78 | ZB (aa) | eS26 | polymer | 101 | 11645.8 | 1 | UniProt (Q56JV1) Pfam (PF01283) | Oryctolagus cuniculus (Rabbit) | |
| 79 | AC (bb) | eS27 | polymer | 83 | 9349.0 | 1 | UniProt (Q2KHT7) Pfam (PF01667) | Oryctolagus cuniculus (Rabbit) | |
| 80 | BC (cc) | eS28 | polymer | 62 | 7007.1 | 1 | UniProt (G1TIB4) Pfam (PF01200) | Oryctolagus cuniculus (Rabbit) | |
| 81 | CC (dd) | uS14 | polymer | 55 | 6559.6 | 1 | UniProt (G1U7M4) Pfam (PF00253) | Oryctolagus cuniculus (Rabbit) | |
| 82 | DC (ee) | eS30 | polymer | 55 | 6317.5 | 1 | UniProt (G1T8A2) Pfam (PF04758) | Oryctolagus cuniculus (Rabbit) | |
| 83 | EC (ff) | eS31 | polymer | 68 | 7986.4 | 1 | UniProt (G1SK22) Pfam (PF01599) | Oryctolagus cuniculus (Rabbit) | |
| 84 | FC (gg) | RACK1 | polymer | 313 | 34669.1 | 1 | UniProt (G1SJB4) Pfam (PF00400) | Oryctolagus cuniculus (Rabbit) | |
| 85 | AD, AE, AF, AG, AH... (5, 7, 9, 8, A...) | MAGNESIUM ION | non-polymer | 24.3 | 297 | Chemie (MG) PubChem (888) | |||
| 86 | OK, RK, SK, TK, UK... (g, j, m, o, p...) | ZINC ION | non-polymer | 65.4 | 8 | Chemie (ZN) | |||
| 87 | VK (v) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) PubChem (136073927) PubChem (135398619) PubChem (135402030) PubChem (135431654) PubChem (135566337) PubChem (135760556) PubChem (136026707) PubChem (136053418) PubChem (136663964) PubChem (136664748) PubChem (136759848) PubChem (136759849) PubChem (136759850) PubChem (136836636) PubChem (136847074) PubChem (172898537) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 84 |
| Total formula weight | 3307183.8 | |
| Non-Polymers* | Number of molecules | 306 |
| Total formula weight | 8185.1 | |
| All* | Total formula weight | 3315368.8 |
