6MTD
Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (5) | 28S rRNA | polymer | 3597 | 1167366.1 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 2 | B (7) | 5S rRNA | polymer | 120 | 38691.9 | 1 | GenBank (39) | Oryctolagus cuniculus (Rabbit) | |
| 3 | C (8) | 5.8S rRNA | polymer | 151 | 48559.7 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 4 | D (A) | uL2 | polymer | 248 | 26998.6 | 1 | UniProt (G1TT27) Pfam (PF00181) Pfam (PF03947) | Oryctolagus cuniculus (Rabbit) | |
| 5 | E (B) | uL3 | polymer | 394 | 45119.8 | 1 | UniProt (G1TL06) Pfam (PF00297) | Oryctolagus cuniculus (Rabbit) | |
| 6 | F (C) | uL4 | polymer | 362 | 41114.4 | 1 | UniProt (G1SVW5) Pfam (PF00573) Pfam (PF14374) | Oryctolagus cuniculus (Rabbit) | |
| 7 | G (D) | uL18 | polymer | 293 | 34077.4 | 1 | UniProt (G1SYJ6) UniProt (by SIFTS) (P19949) | Oryctolagus cuniculus (Rabbit) | |
| 8 | H (E) | eL6 | polymer | 291 | 33028.3 | 1 | UniProt (G1SKF7) Pfam (PF03868) Pfam (PF01159) | Oryctolagus cuniculus (Rabbit) | |
| 9 | I (F) | uL30 | polymer | 225 | 26658.8 | 1 | UniProt (G1SV32) Pfam (PF08079) Pfam (PF00327) | Oryctolagus cuniculus (Rabbit) | |
| 10 | J (G) | eL8 | polymer | 319 | 36221.5 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 11 | K (H) | uL6 | polymer | 190 | 21627.2 | 1 | UniProt (G1TX33) Pfam (PF00347) UniProt (by SIFTS) (G1SWI6) | Oryctolagus cuniculus (Rabbit) | |
| 12 | L (I) | uL16 | polymer | 214 | 24643.1 | 1 | UniProt (B7NZQ2) Pfam (PF00252) | Oryctolagus cuniculus (Rabbit) | |
| 13 | M (J) | uL5 | polymer | 170 | 19399.5 | 1 | UniProt (G1TUB8) Pfam (PF00281) Pfam (PF00673) | Oryctolagus cuniculus (Rabbit) | |
| 14 | N (L) | eL13 | polymer | 210 | 24200.5 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 15 | O (M) | eL14 | polymer | 138 | 16217.4 | 1 | UniProt (U3KNW6) Pfam (PF01929) UniProt (by SIFTS) (G1SZ12) | Oryctolagus cuniculus (Rabbit) | |
| 16 | P (N) | eL15 | polymer | 203 | 24076.1 | 1 | UniProt (G1T0C1) Pfam (PF00827) | Oryctolagus cuniculus (Rabbit) | |
| 17 | Q (O) | uL13 | polymer | 199 | 23144.9 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 18 | R (P) | uL22 | polymer | 153 | 17758.7 | 1 | UniProt (G1SCJ6) Pfam (PF00237) | Oryctolagus cuniculus (Rabbit) | |
| 19 | S (Q) | eL18 | polymer | 187 | 21568.5 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 20 | T (R) | eL19 | polymer | 180 | 21613.0 | 1 | UniProt (Q3T0W9) Pfam (PF01280) | Oryctolagus cuniculus (Rabbit) | |
| 21 | U (S) | eL20 | polymer | 176 | 20827.6 | 1 | UniProt (A0A287APR1) Pfam (PF01775) | Oryctolagus cuniculus (Rabbit) | |
| 22 | V (T) | eL21 | polymer | 159 | 18478.8 | 1 | UniProt (G1SHQ2) Pfam (PF01157) | Oryctolagus cuniculus (Rabbit) | |
| 23 | W (U) | eL22 | polymer | 99 | 11495.3 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 24 | X (V) | uL14 | polymer | 131 | 13972.4 | 1 | UniProt (G1T6D1) Pfam (PF00238) | Oryctolagus cuniculus (Rabbit) | |
| 25 | Y (W) | eL24 | polymer | 157 | 17825.1 | 1 | UniProt (G1SE28) Pfam (PF01246) | Oryctolagus cuniculus (Rabbit) | |
| 26 | Z (X) | uL23 | polymer | 118 | 13727.2 | 1 | UniProt (Q24JY1) Pfam (PF03939) Pfam (PF00276) | Oryctolagus cuniculus (Rabbit) | |
| 27 | AA (Y) | uL24 | polymer | 134 | 15891.8 | 1 | UniProt (G1SQH0) Pfam (PF16906) Pfam (PF00467) | Oryctolagus cuniculus (Rabbit) | |
| 28 | BA (Z) | eL27 | polymer | 135 | 15704.6 | 1 | UniProt (G1TXF6) Pfam (PF00467) Pfam (PF01777) | Oryctolagus cuniculus (Rabbit) | |
| 29 | CA (a) | uL15 | polymer | 147 | 16489.4 | 1 | UniProt (G1SNY0) Pfam (PF00828) | Oryctolagus cuniculus (Rabbit) | |
| 30 | DA (b) | eL29 | polymer | 245 | 26708.7 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 31 | EA (c) | eL30 | polymer | 98 | 10914.8 | 1 | UniProt (G1TDL2) Pfam (PF01248) | Oryctolagus cuniculus (Rabbit) | |
| 32 | FA (d) | eL31 | polymer | 107 | 12635.7 | 1 | UniProt (G1SHG0) Pfam (PF01198) | Oryctolagus cuniculus (Rabbit) | |
| 33 | GA (e) | eL32 | polymer | 128 | 15022.0 | 1 | UniProt (G1U437) Pfam (PF01655) UniProt (by SIFTS) (G1TUN8) | Oryctolagus cuniculus (Rabbit) | |
| 34 | HA (f) | eL33 | polymer | 109 | 12449.6 | 1 | UniProt (G1SF08) Pfam (PF01247) | Oryctolagus cuniculus (Rabbit) | |
| 35 | IA (g) | eL34 | polymer | 114 | 12994.6 | 1 | UniProt (P49207) Pfam (PF01199) | Oryctolagus cuniculus (Rabbit) | Large ribosomal subunit protein eL34 |
| 36 | JA (h) | uL29 | polymer | 122 | 14435.4 | 1 | UniProt (G1SIT5) Pfam (PF00831) | Oryctolagus cuniculus (Rabbit) | |
| 37 | KA (i) | eL36 | polymer | 102 | 11888.4 | 1 | UniProt (G1TTQ5) Pfam (PF01158) | Oryctolagus cuniculus (Rabbit) | |
| 38 | LA (j) | eL37 | polymer | 86 | 10090.9 | 1 | UniProt (U3KPD5) Pfam (PF01907) | Oryctolagus cuniculus (Rabbit) | |
| 39 | MA (k) | eL38 | polymer | 69 | 8107.8 | 1 | UniProt (Q32PB9) Pfam (PF01781) | Oryctolagus cuniculus (Rabbit) | |
| 40 | NA (l) | eL39 | polymer | 50 | 6324.6 | 1 | UniProt (G1TTN1) Pfam (PF00832) | Oryctolagus cuniculus (Rabbit) | |
| 41 | OA (m) | eL40 | polymer | 52 | 6212.6 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 42 | PA (n) | eL41 | polymer | 25 | 3473.5 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 43 | QA (o) | eL42 | polymer | 103 | 12070.5 | 1 | UniProt (G1T040) Pfam (PF00935) | Oryctolagus cuniculus (Rabbit) | |
| 44 | RA (p) | eL43 | polymer | 91 | 10168.2 | 1 | UniProt (G1SY53) Pfam (PF01780) | Oryctolagus cuniculus (Rabbit) | |
| 45 | SA (r) | el28 | polymer | 124 | 14220.7 | 1 | UniProt (G1U7L1) Pfam (PF01778) | Oryctolagus cuniculus (Rabbit) | |
| 46 | TA (s) | uL10 | polymer | 196 | 21521.1 | 1 | UniProt (Q29214) Pfam (PF00466) Pfam (PF17777) | Oryctolagus cuniculus (Rabbit) | 60S ribosomal protein L10E |
| 47 | UA (t) | eL11 | polymer | 153 | 16561.1 | 1 | UniProt (G1SMR7) Pfam (PF03946) Pfam (PF00298) | Oryctolagus cuniculus (Rabbit) | |
| 48 | VA (u) | uL1 | polymer | 206 | 23599.9 | 1 | UniProt (G1SKZ8) Pfam (PF00687) | Oryctolagus cuniculus (Rabbit) | |
| 49 | WA (v) | eEF2 | polymer | 839 | 93391.0 | 1 | Oryctolagus cuniculus (Rabbit) | EF-2 | |
| 50 | XA (w) | SERBP1 | polymer | 26 | 3083.3 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 51 | YA (9) | 18S rRNA | polymer | 1698 | 548241.4 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 52 | ZA (AA) | uS2 | polymer | 217 | 24361.9 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 53 | AB (BB) | eS1 | polymer | 213 | 24759.1 | 1 | UniProt (G1SS70) Pfam (PF01015) | Oryctolagus cuniculus (Rabbit) | |
| 54 | BB (CC) | uS5 | polymer | 221 | 24441.8 | 1 | UniProt (O18789) Pfam (PF00333) Pfam (PF03719) | Oryctolagus cuniculus (Rabbit) | |
| 55 | CB (DD) | uS3 | polymer | 228 | 25215.6 | 1 | UniProt (E2RH47) Pfam (PF00189) Pfam (PF07650) | Oryctolagus cuniculus (Rabbit) | |
| 56 | DB (EE) | eS4 | polymer | 262 | 29523.7 | 1 | UniProt (Q76N24) Pfam (PF08071) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) | Oryctolagus cuniculus (Rabbit) | |
| 57 | EB (FF) | uS7 | polymer | 204 | 22913.5 | 1 | UniProt (G1TFM5) Pfam (PF00177) | Oryctolagus cuniculus (Rabbit) | |
| 58 | FB (GG) | eS6 | polymer | 237 | 27471.5 | 1 | UniProt (G1TM55) Pfam (PF01092) | Oryctolagus cuniculus (Rabbit) | |
| 59 | GB (HH) | eS7 | polymer | 194 | 22168.9 | 1 | UniProt (G1SVB0) | Oryctolagus cuniculus (Rabbit) | |
| 60 | HB (II) | eS8 | polymer | 206 | 24003.0 | 1 | UniProt (Q5E958) Pfam (PF01201) | Oryctolagus cuniculus (Rabbit) | |
| 61 | IB (JJ) | uS4 | polymer | 185 | 21649.6 | 1 | UniProt (B7NZS8) Pfam (PF00163) Pfam (PF01479) | Oryctolagus cuniculus (Rabbit) | |
| 62 | JB (KK) | eS10 | polymer | 96 | 11529.7 | 1 | UniProt (G1TPV3) Pfam (PF03501) | Oryctolagus cuniculus (Rabbit) | |
| 63 | KB (LL) | uS17 | polymer | 158 | 18468.8 | 1 | UniProt (G1TRM4) Pfam (PF16205) Pfam (PF00366) | Oryctolagus cuniculus (Rabbit) | |
| 64 | LB (MM) | eS12 | polymer | 117 | 13048.2 | 1 | UniProt (G1SFR8) Pfam (PF01248) | Oryctolagus cuniculus (Rabbit) | |
| 65 | MB (NN) | uS15 | polymer | 149 | 17057.1 | 1 | UniProt (G1SP51) Pfam (PF08069) Pfam (PF00312) | Oryctolagus cuniculus (Rabbit) | |
| 66 | NB (OO) | uS11 | polymer | 136 | 14544.7 | 1 | UniProt (P13471) Pfam (PF00411) | Oryctolagus cuniculus (Rabbit) | |
| 67 | OB (PP) | uS19 | polymer | 120 | 14246.9 | 1 | UniProt (G1U0Q2) Pfam (PF00203) | Oryctolagus cuniculus (Rabbit) | |
| 68 | PB (QQ) | uS9 | polymer | 142 | 16032.8 | 1 | UniProt (Q3T0X6) Pfam (PF00380) | Oryctolagus cuniculus (Rabbit) | |
| 69 | QB (RR) | eS17 | polymer | 132 | 15250.7 | 1 | UniProt (G1TU13) Pfam (PF00833) | Oryctolagus cuniculus (Rabbit) | |
| 70 | RB (SS) | uS13 | polymer | 144 | 16898.6 | 1 | UniProt (G1TPG3) Pfam (PF00416) | Oryctolagus cuniculus (Rabbit) | |
| 71 | SB (TT) | eS19 | polymer | 141 | 15611.0 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 72 | TB (UU) | uS10 | polymer | 100 | 11395.5 | 1 | UniProt (Q3ZBH8) Pfam (PF00338) | Oryctolagus cuniculus (Rabbit) | |
| 73 | UB (VV) | eS21 | polymer | 83 | 9124.4 | 1 | UniProt (Q32PB8) Pfam (PF01249) | Oryctolagus cuniculus (Rabbit) | |
| 74 | VB (WW) | uS8 | polymer | 129 | 14734.4 | 1 | UniProt (G1TG89) Pfam (PF00410) | Oryctolagus cuniculus (Rabbit) | |
| 75 | WB (XX) | uS12 | polymer | 141 | 15626.4 | 1 | UniProt (Q3T199) Pfam (PF00164) | Oryctolagus cuniculus (Rabbit) | |
| 76 | XB (YY) | eS24 | polymer | 124 | 14432.1 | 1 | UniProt (P62847) Pfam (PF01282) | Oryctolagus cuniculus (Rabbit) | Small ribosomal subunit protein eS24 |
| 77 | YB (ZZ) | eS25 | polymer | 75 | 8526.1 | 1 | UniProt (G1TDB3) Pfam (PF03297) | Oryctolagus cuniculus (Rabbit) | |
| 78 | ZB (aa) | eS26 | polymer | 101 | 11645.8 | 1 | UniProt (Q56JV1) Pfam (PF01283) | Oryctolagus cuniculus (Rabbit) | |
| 79 | AC (bb) | eS27 | polymer | 83 | 9349.0 | 1 | UniProt (Q2KHT7) Pfam (PF01667) | Oryctolagus cuniculus (Rabbit) | |
| 80 | BC (cc) | eS28 | polymer | 62 | 7007.1 | 1 | UniProt (G1TIB4) Pfam (PF01200) | Oryctolagus cuniculus (Rabbit) | |
| 81 | CC (dd) | uS14 | polymer | 55 | 6559.6 | 1 | UniProt (G1U7M4) Pfam (PF00253) | Oryctolagus cuniculus (Rabbit) | |
| 82 | DC (ee) | eS30 | polymer | 55 | 6317.5 | 1 | UniProt (G1T8A2) Pfam (PF04758) | Oryctolagus cuniculus (Rabbit) | |
| 83 | EC (ff) | eS31 | polymer | 68 | 7986.4 | 1 | UniProt (G1SK22) Pfam (PF00240) Pfam (PF01599) | Oryctolagus cuniculus (Rabbit) | |
| 84 | FC (gg) | RACK1 | polymer | 313 | 34669.1 | 1 | UniProt (G1SJB4) Pfam (PF00400) | Oryctolagus cuniculus (Rabbit) | |
| 85 | AD, AE, AF, AG, AH... (5, 7, 9, 8, A...) | MAGNESIUM ION | non-polymer | 24.3 | 297 | Chemie (MG) | |||
| 86 | OK, RK, SK, TK, UK... (g, j, m, o, p...) | ZINC ION | non-polymer | 65.4 | 8 | Chemie (ZN) | |||
| 87 | VK (v) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 84 |
| Total formula weight | 3307183.8 | |
| Non-Polymers* | Number of molecules | 306 |
| Total formula weight | 8185.1 | |
| All* | Total formula weight | 3315368.8 |
