6MSS
Diversity in the type II Natural Killer T cell receptor repertoire and antigen specificity leads to differing CD1d docking strategies
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | A11B8.2 NKT TCR alpha-chain | polymer | 203 | 22644.1 | 1 | Mus musculus (Mouse) | ||
2 | B | A11B8.2 NKT TCR beta-chain | polymer | 245 | 27412.3 | 1 | Mus musculus (Mouse) | ||
3 | C | Antigen-presenting glycoprotein CD1d1 | polymer | 302 | 34662.0 | 1 | UniProt (P11609) Pfam (PF16497) Pfam (PF07654) In PDB | Mus musculus (Mouse) | |
4 | D | Beta-2-microglobulin | polymer | 99 | 11660.4 | 1 | UniProt (P01887) Pfam (PF07654) In PDB | Mus musculus (Mouse) | |
5 | E | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
6 | C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
7 | C | (2S)-2-(heptadecanoyloxy)-3-{[(10S)-10-methyloctadecanoyl]oxy}propyl alpha-D-glucopyranosiduronic acid | non-polymer | 801.1 | 1 | Chemie (SRV) | |||
8 | water | water | 18.0 | 24 | Chemie (HOH) |
Sequence modifications
C: 1 - 279 (UniProt: P11609)
PDB | External Database | Details |
---|---|---|
His 201 | Asp 219 | conflict |
Gly 280 | - | expression tag |
Ser 281 | - | expression tag |
Leu 282 | - | expression tag |
His 283 | - | expression tag |
His 284 | - | expression tag |
Ile 285 | - | expression tag |
Leu 286 | - | expression tag |
Asp 287 | - | expression tag |
Ala 288 | - | expression tag |
Gln 289 | - | expression tag |
Lys 290 | - | expression tag |
Met 291 | - | expression tag |
Val 292 | - | expression tag |
Trp 293 | - | expression tag |
Asn 294 | - | expression tag |
His 295 | - | expression tag |
Arg 296 | - | expression tag |
His 297 | - | expression tag |
His 298 | - | expression tag |
His 299 | - | expression tag |
His 300 | - | expression tag |
His 301 | - | expression tag |
His 302 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 96378.8 | |
Branched | Number of molecules | 1 |
Total formula weight | 424.4 | |
Non-Polymers* | Number of molecules | 3 |
Total formula weight | 1243.6 | |
All* | Total formula weight | 98046.7 |