6MAR
HIV-1 Envelope Glycoprotein Clone BG505 delCT N332T in complex with broadly neutralizing antibody Fab PGT151
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C (M, H) | Immunoglobulin G PGT151 Fab, Heavy chain | polymer | 240 | 26087.4 | 2 | Homo sapiens | ||
| 2 | B, D (N, L) | Immunoglobulin G PGT151, Light chain | polymer | 219 | 24057.8 | 2 | Homo sapiens | ||
| 3 | E, H, I (A, C, E) | Envelope glycoprotein gp160 | polymer | 494 | 55261.6 | 3 | UniProt (Q2N0S6) | Human immunodeficiency virus 1 | |
| 4 | F, G, J (B, D, F) | Envelope glycoprotein gp160 | polymer | 220 | 24908.6 | 3 | UniProt (Q2N0S7) | Human immunodeficiency virus 1 | |
| 5 | AA, BA, CA, DA, FA... (a, b, c, d, f...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 22 | In PDB GlyTouCan (G42666HT) | |||
| 6 | N (K) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1073.0 | 1 | In PDB GlyTouCan (G56014GC) | |||
| 7 | JA, Q (j, Q) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 2 | In PDB GlyTouCan (G15407YE) | |||
| 8 | T (T) | beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-[beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1990.8 | 1 | In PDB GlyTouCan (G45187EI) | |||
| 9 | OA, U (o, U) | beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1828.7 | 2 | In PDB GlyTouCan (G32305RZ) | |||
| 10 | EA (e) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G81315DD) | |||
| 11 | HA (h) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1235.1 | 1 | In PDB GlyTouCan (G07617FP) | |||
| 12 | NA (n) | beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-[beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1787.6 | 1 | In PDB GlyTouCan (G07695ZT) | |||
| 13 | AB, BB, CB, DB, EB... (C, E, F, A, B...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 22 | Chemie (NAG) |
Sequence modifications
A, C, E: 31 - 505 (UniProt: Q2N0S6)
B, D, F: 506 - 711 (UniProt: Q2N0S7)
| PDB | External Database | Details |
|---|---|---|
| Met 10 | - | expression tag |
| Glu 11 | - | expression tag |
| Thr 12 | - | expression tag |
| Asp 13 | - | expression tag |
| Thr 14 | - | expression tag |
| Leu 15 | - | expression tag |
| Leu 16 | - | expression tag |
| Leu 17 | - | expression tag |
| Trp 18 | - | expression tag |
| Val 19 | - | expression tag |
| Leu 20 | - | expression tag |
| Leu 21 | - | expression tag |
| Leu 22 | - | expression tag |
| Trp 23 | - | expression tag |
| Val 24 | - | expression tag |
| Pro 25 | - | expression tag |
| Gly 26 | - | expression tag |
| Ser 27 | - | expression tag |
| Thr 28 | - | expression tag |
| Gly 29 | - | expression tag |
| Asp 30 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Gly 712 | - | expression tag |
| Gly 713 | - | expression tag |
| Ser 714 | - | expression tag |
| Gly 715 | - | expression tag |
| Gly 716 | - | expression tag |
| Gly 717 | - | expression tag |
| Trp 718 | - | expression tag |
| Ser 719 | - | expression tag |
| His 720 | - | expression tag |
| Pro 721 | - | expression tag |
| Gln 722 | - | expression tag |
| Phe 723 | - | expression tag |
| Glu 724 | - | expression tag |
| Lys 725 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 10 |
| Total formula weight | 340801.0 | |
| Branched | Number of molecules | 31 |
| Total formula weight | 21002.5 | |
| Non-Polymers* | Number of molecules | 22 |
| Total formula weight | 4866.6 | |
| All* | Total formula weight | 366670.0 |
