6M6B
Cryo-EM structure of Thermus thermophilus Mfd in complex with RNA polymerase and ATP-gamma-S
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B | DNA-directed RNA polymerase subunit alpha | polymer | 315 | 35056.2 | 2 | UniProt (Q5SHR6) Pfam (PF01193) Pfam (PF01000) Pfam (PF03118) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | RNAP subunit alpha,RNA polymerase subunit alpha,Transcriptase subunit alpha |
| 2 | C | DNA-directed RNA polymerase subunit beta | polymer | 1119 | 125436.5 | 1 | UniProt (Q8RQE9) Pfam (PF04563) Pfam (PF04561) Pfam (PF04565) Pfam (PF10385) Pfam (PF00562) Pfam (PF04560) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | RNAP subunit beta,RNA polymerase subunit beta,Transcriptase subunit beta |
| 3 | D | DNA-directed RNA polymerase subunit beta' | polymer | 1524 | 170997.4 | 1 | UniProt (Q8RQE8) Pfam (PF04997) Pfam (PF21668) Pfam (PF00623) Pfam (PF04983) Pfam (PF05000) Pfam (PF04998) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | RNAP subunit beta',RNA polymerase subunit beta',Transcriptase subunit beta' |
| 4 | E | DNA-directed RNA polymerase subunit omega | polymer | 99 | 11533.3 | 1 | UniProt (Q8RQE7) Pfam (PF01192) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | RNAP omega subunit,RNA polymerase omega subunit,Transcriptase subunit omega |
| 5 | M | Transcription-repair-coupling factor | polymer | 978 | 109874.0 | 1 | UniProt (Q72KB4) Pfam (PF02559) Pfam (PF00270) Pfam (PF00271) Pfam (PF03461) In PDB | Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) | TRCF |
| 6 | T | template strand DNA | polymer | 63 | 19290.3 | 1 | Thermus thermophilus | ||
| 7 | N | nontemplate strand DNA | polymer | 63 | 19366.4 | 1 | Thermus thermophilus | ||
| 8 | D | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 9 | D | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
| 10 | M | PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER | non-polymer | 523.2 | 1 | Chemie (AGS) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 526610.4 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 678.4 | |
| All* | Total formula weight | 527288.8 |
