6M16
Cryo-EM structures of SADS-CoV spike glycoproteins
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | B, A, C | Spike glycoprotein | polymer | 1120 | 124780.6 | 3 | UniProt (A0A2P1G1L3) Pfam (PF16451) Pfam (PF19209) Pfam (PF01601) In PDB | Swine acute diarrhea syndrome coronavirus | |
| 2 | D, E, F, H, I... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 9 | In PDB GlyTouCan (G42666HT) | |||
| 3 | G, K, O | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 3 | In PDB GlyTouCan (G15407YE) | |||
| 4 | A, C, B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 33 | Chemie (NAG) |
Sequence modifications
B, A, C: 1 - 1068 (UniProt: A0A2P1G1L3)
| PDB | External Database | Details |
|---|---|---|
| Leu 1069 | - | expression tag |
| Glu 1070 | - | expression tag |
| Val 1071 | - | expression tag |
| Leu 1072 | - | expression tag |
| Phe 1073 | - | expression tag |
| Gln 1074 | - | expression tag |
| Gly 1075 | - | expression tag |
| Pro 1076 | - | expression tag |
| Gly 1077 | - | expression tag |
| Gly 1078 | - | expression tag |
| Gly 1079 | - | expression tag |
| Ser 1080 | - | expression tag |
| Gly 1081 | - | expression tag |
| Gly 1082 | - | expression tag |
| Gly 1083 | - | expression tag |
| Ser 1084 | - | expression tag |
| Gly 1085 | - | expression tag |
| Tyr 1086 | - | expression tag |
| Ile 1087 | - | expression tag |
| Pro 1088 | - | expression tag |
| Glu 1089 | - | expression tag |
| Ala 1090 | - | expression tag |
| Pro 1091 | - | expression tag |
| Arg 1092 | - | expression tag |
| Asp 1093 | - | expression tag |
| Gly 1094 | - | expression tag |
| Gln 1095 | - | expression tag |
| Ala 1096 | - | expression tag |
| Tyr 1097 | - | expression tag |
| Val 1098 | - | expression tag |
| Arg 1099 | - | expression tag |
| Lys 1100 | - | expression tag |
| Asp 1101 | - | expression tag |
| Gly 1102 | - | expression tag |
| Glu 1103 | - | expression tag |
| Trp 1104 | - | expression tag |
| Val 1105 | - | expression tag |
| Leu 1106 | - | expression tag |
| Leu 1107 | - | expression tag |
| Ser 1108 | - | expression tag |
| Thr 1109 | - | expression tag |
| Phe 1110 | - | expression tag |
| Leu 1111 | - | expression tag |
| Gly 1112 | - | expression tag |
| Trp 1113 | - | expression tag |
| Ser 1114 | - | expression tag |
| His 1115 | - | expression tag |
| Pro 1116 | - | expression tag |
| Gln 1117 | - | expression tag |
| Phe 1118 | - | expression tag |
| Glu 1119 | - | expression tag |
| Lys 1120 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 374341.8 | |
| Branched | Number of molecules | 12 |
| Total formula weight | 5579.2 | |
| Non-Polymers* | Number of molecules | 33 |
| Total formula weight | 7299.9 | |
| All* | Total formula weight | 387220.9 |
