6M15
Cryo-EM structures of HKU2 spike glycoproteins
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (B, A, C) | Spike glycoprotein | polymer | 1118 | 124526.7 | 3 | UniProt (A8JNZ2) Pfam (PF16451) Pfam (PF19209) Pfam (PF01601) | Rhinolophus bat coronavirus HKU2 | |
| 2 | D, E, F, G, H... (D, E, F, G, H...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 18 | In PDB GlyTouCan (G42666HT) | |||
| 3 | J, Q, X (J, Q, X) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 3 | In PDB GlyTouCan (G15407YE) | |||
| 4 | AA, BA, CA, DA, EA... (B, A, C) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 27 | Chemie (NAG) | |||
| 5 | AB, BB, ZA (A, C, B) | water | water | 18.0 | 71 | Chemie (HOH) |
Sequence modifications
B, A, C: 1 - 1066 (UniProt: A8JNZ2)
| PDB | External Database | Details |
|---|---|---|
| Leu 1067 | - | expression tag |
| Glu 1068 | - | expression tag |
| Val 1069 | - | expression tag |
| Leu 1070 | - | expression tag |
| Phe 1071 | - | expression tag |
| Gln 1072 | - | expression tag |
| Gly 1073 | - | expression tag |
| Pro 1074 | - | expression tag |
| Gly 1075 | - | expression tag |
| Gly 1076 | - | expression tag |
| Gly 1077 | - | expression tag |
| Ser 1078 | - | expression tag |
| Gly 1079 | - | expression tag |
| Gly 1080 | - | expression tag |
| Gly 1081 | - | expression tag |
| Ser 1082 | - | expression tag |
| Gly 1083 | - | expression tag |
| Tyr 1084 | - | expression tag |
| Ile 1085 | - | expression tag |
| Pro 1086 | - | expression tag |
| Glu 1087 | - | expression tag |
| Ala 1088 | - | expression tag |
| Pro 1089 | - | expression tag |
| Arg 1090 | - | expression tag |
| Asp 1091 | - | expression tag |
| Gly 1092 | - | expression tag |
| Gln 1093 | - | expression tag |
| Ala 1094 | - | expression tag |
| Tyr 1095 | - | expression tag |
| Val 1096 | - | expression tag |
| Arg 1097 | - | expression tag |
| Lys 1098 | - | expression tag |
| Asp 1099 | - | expression tag |
| Gly 1100 | - | expression tag |
| Glu 1101 | - | expression tag |
| Trp 1102 | - | expression tag |
| Val 1103 | - | expression tag |
| Leu 1104 | - | expression tag |
| Leu 1105 | - | expression tag |
| Ser 1106 | - | expression tag |
| Thr 1107 | - | expression tag |
| Phe 1108 | - | expression tag |
| Leu 1109 | - | expression tag |
| Gly 1110 | - | expression tag |
| Trp 1111 | - | expression tag |
| Ser 1112 | - | expression tag |
| His 1113 | - | expression tag |
| Pro 1114 | - | expression tag |
| Gln 1115 | - | expression tag |
| Phe 1116 | - | expression tag |
| Glu 1117 | - | expression tag |
| Lys 1118 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 373580.0 | |
| Branched | Number of molecules | 21 |
| Total formula weight | 9398.8 | |
| Non-Polymers* | Number of molecules | 27 |
| Total formula weight | 5972.6 | |
| All* | Total formula weight | 388951.5 |
