6LSA
Complex structure of bovine herpesvirus 1 glycoprotein D and bovine nectin-1 IgV
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | Nectin cell adhesion molecule 1 | polymer | 109 | 12100.8 | 2 | UniProt (F1MQJ3) Pfam (PF07686) In PDB | Bos taurus (Bovine) | |
2 | F, C | Envelope glycoprotein D | polymer | 311 | 34871.6 | 2 | UniProt (Q76PF1) Pfam (PF01537) In PDB | Bovine alphaherpesvirus 1 | Glycoprotein D |
3 | D | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
4 | F, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
5 | water | water | 18.0 | 199 | Chemie (HOH) |
Sequence modifications
F, C: 1 - 301 (UniProt: Q76PF1)
PDB | External Database | Details |
---|---|---|
Ala -3 | - | expression tag |
Asp -2 | - | expression tag |
Glu -1 | - | expression tag |
Phe 0 | - | expression tag |
His 302 | - | expression tag |
His 303 | - | expression tag |
His 304 | - | expression tag |
His 305 | - | expression tag |
His 306 | - | expression tag |
His 307 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 93944.8 | |
Branched | Number of molecules | 1 |
Total formula weight | 424.4 | |
Non-Polymers* | Number of molecules | 2 |
Total formula weight | 442.4 | |
All* | Total formula weight | 94811.6 |