6LSA

Complex structure of bovine herpesvirus 1 glycoprotein D and bovine nectin-1 IgV

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, C (A, B)	Nectin cell adhesion molecule 1	polymer	109	12100.8	2	UniProt (F1MQJ3) Pfam (PF07686)	Bos taurus (Bovine)
2	B, D (F, C)	Envelope glycoprotein D	polymer	311	34871.6	2	UniProt (Q76PF1) Pfam (PF01537)	Bovine alphaherpesvirus 1	Glycoprotein D
3	E (D)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		424.4	1	In PDB GlyTouCan (G42666HT)
4	F, G (F, C)	2-acetamido-2-deoxy-beta-D-glucopyranose	non-polymer		221.2	2	Chemie (NAG)
5	H, I, J, K (A, F, B, C)	water	water		18.0	199	Chemie (HOH)

Sequence modifications

F, C: 1 - 301 (UniProt: Q76PF1)

PDB	External Database	Details
Ala -3	-	expression tag
Asp -2	-	expression tag
Glu -1	-	expression tag
Phe 0	-	expression tag
His 302	-	expression tag
His 303	-	expression tag
His 304	-	expression tag
His 305	-	expression tag
His 306	-	expression tag
His 307	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	4
	Total formula weight	93944.8
Branched	Number of molecules	1
	Total formula weight	424.4
Non-Polymers*	Number of molecules	2
	Total formula weight	442.4
All*	Total formula weight	94811.6

*Water molecules are not included.