6L7O
cryo-EM structure of cyanobacteria Fd-NDH-1L complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | NAD(P)H-quinone oxidoreductase subunit 1 | polymer | 372 | 40566.0 | 1 | UniProt (Q8DL32) Pfam (PF00146) | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase I subunit 1,NDH-1 subunit 1,NDH-A |
| 2 | B (B) | NAD(P)H-quinone oxidoreductase subunit 2 | polymer | 515 | 55168.5 | 1 | UniProt (Q8DMR6) Pfam (PF19530) Pfam (PF00361) | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase subunit 2,NADH-plastoquinone oxidoreductase subunit 2,NDH-1,subunit 2 |
| 3 | C (C) | NAD(P)H-quinone oxidoreductase subunit 3 | polymer | 132 | 15013.9 | 1 | UniProt (Q8DJ02) Pfam (PF00507) | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase subunit 3,NADH-plastoquinone oxidoreductase subunit 3,NDH-1 subunit 3,NDH-C |
| 4 | D (D) | NAD(P)H-quinone oxidoreductase chain 4 1 | polymer | 529 | 57847.5 | 1 | UniProt (Q8DKY0) Pfam (PF00361) | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase I,chain 4 1,NDH-1 |
| 5 | E (E) | NAD(P)H-quinone oxidoreductase subunit 4L | polymer | 101 | 11140.3 | 1 | UniProt (Q8DL29) Pfam (PF00420) | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase subunit 4L,NADH-plastoquinone oxidoreductase subunit 4L,NDH-1,subunit 4L,NDH-E |
| 6 | F (F) | NADH dehydrogenase subunit 5 | polymer | 656 | 72025.4 | 1 | UniProt (Q8DKX9) Pfam (PF00662) Pfam (PF00361) Pfam (PF01010) | Thermosynechococcus elongatus BP-1 | |
| 7 | G (G) | NADH-quinone oxidoreductase subunit J | polymer | 200 | 21580.6 | 1 | UniProt (Q8DL30) Pfam (PF00499) | Thermosynechococcus elongatus BP-1 | |
| 8 | H (H) | NAD(P)H-quinone oxidoreductase subunit H | polymer | 394 | 45271.2 | 1 | UniProt (Q8DJD9) Pfam (PF00346) | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase subunit H,NADH-plastoquinone oxidoreductase subunit H,NDH-1 subunit H,NDH-H |
| 9 | I (I) | NAD(P)H-quinone oxidoreductase subunit I | polymer | 196 | 22444.8 | 1 | UniProt (Q8DL31) Pfam (PF12838) | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase I subunit I,NDH-1 subunit I,NDH-I |
| 10 | J (J) | NAD(P)H-quinone oxidoreductase subunit J | polymer | 168 | 19363.8 | 1 | UniProt (Q8DJ01) Pfam (PF00329) | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase subunit J,NADH-plastoquinone oxidoreductase subunit J,NDH-1 subunit J,NDH-J |
| 11 | K (K) | NAD(P)H-quinone oxidoreductase subunit K | polymer | 237 | 25767.0 | 1 | UniProt (Q8DKZ4) Pfam (PF01058) | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase I subunit K,NDH-1 subunit K,NDH-K |
| 12 | L (L) | NAD(P)H-quinone oxidoreductase subunit L | polymer | 76 | 8575.1 | 1 | UniProt (Q8DKZ3) Pfam (PF10716) | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase I subunit L,NDH-1 subunit L,NDH-L |
| 13 | M (M) | NAD(P)H-quinone oxidoreductase subunit M | polymer | 111 | 12584.1 | 1 | UniProt (Q8DLN5) Pfam (PF10664) | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase I subunit M,NDH-M |
| 14 | N (N) | NAD(P)H-quinone oxidoreductase subunit N | polymer | 150 | 16656.2 | 1 | UniProt (Q8DJU2) Pfam (PF11909) | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase I subunit N,NDH-N |
| 15 | O (O) | NAD(P)H-quinone oxidoreductase subunit O | polymer | 70 | 7877.1 | 1 | UniProt (Q8DMU4) Pfam (PF11910) | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase I subunit O,NDH-1 subunit O,NDH-O |
| 16 | P (P) | NAD(P)H-quinone oxidoreductase subunit P | polymer | 44 | 4878.6 | 1 | UniProt (by SIFTS) (A0ACD6B8Q3) | Thermosynechococcus elongatus BP-1 | |
| 17 | Q (Q) | NAD(P)H-quinone oxidoreductase subunit Q | polymer | 45 | 4844.7 | 1 | UniProt (by SIFTS) (A0ACD6B8Q4) | Thermosynechococcus elongatus BP-1 | |
| 18 | R (R) | Ferredoxin-1 | polymer | 98 | 10854.0 | 1 | UniProt (P0A3C9) Pfam (PF00111) | Thermosynechococcus elongatus BP-1 | Ferredoxin I |
| 19 | S (S) | Tlr0636 protein | polymer | 110 | 12462.6 | 1 | UniProt (Q8DL61) Pfam (PF11623) | Thermosynechococcus elongatus BP-1 | |
| 20 | T (V) | Tlr0472 protein | polymer | 146 | 16016.5 | 1 | UniProt (Q8DLL4) Pfam (PF11210) | Thermosynechococcus elongatus BP-1 | |
| 21 | LB, PC, U (F, P, A) | BETA-CAROTENE | non-polymer | 536.9 | 3 | Chemie (BCR) PubChem (573) PubChem (21672398) PubChem (176490061) PubChem (177696266) PubChem (46783370) PubChem (46846294) PubChem (54603957) PubChem (54612003) PubChem (86765360) PubChem (5315709) PubChem (5280489) PubChem (91827292) PubChem (92863345) PubChem (5353436) PubChem (5356616) PubChem (5927371) PubChem (124919640) PubChem (92863346) PubChem (92863347) PubChem (92863348) PubChem (6477957) PubChem (100990628) PubChem (101525094) PubChem (101525095) PubChem (9828626) PubChem (10256668) PubChem (12305639) PubChem (12305640) PubChem (12305642) PubChem (12305644) PubChem (12305647) PubChem (12305652) PubChem (146673260) PubChem (152743364) PubChem (124919639) PubChem (160505766) PubChem (129651951) PubChem (132274419) PubChem (145925599) PubChem (159562859) PubChem (172654026) PubChem (172878405) PubChem (173398668) | |||
| 22 | EA, FA, GA, KC, MB... (B, H, F, A, D) | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 9 | Chemie (LHG) PubChem (46936292) PubChem (446440) PubChem (73416066) PubChem (65144) PubChem (9547104) PubChem (13305396) PubChem (11846227) PubChem (138986743) | |||
| 23 | W, X (A) | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 2 | Chemie (DGD) PubChem (24865462) PubChem (24865463) PubChem (50904896) PubChem (53480668) PubChem (46936671) PubChem (448441) PubChem (447899) PubChem (4629344) PubChem (15991538) PubChem (154573294) PubChem (171123158) PubChem (134746152) PubChem (140529801) | |||
| 24 | AA, AB, AC, BA, BB... (A, D, F, G, B...) | Digitonin | non-polymer | 1229.3 | 60 | Chemie (AJP) | |||
| 25 | DA (B) | PHYLLOQUINONE | non-polymer | 450.7 | 1 | Chemie (PQN) PubChem (4812) PubChem (21896458) PubChem (57138572) PubChem (5315258) PubChem (5280483) PubChem (5284607) PubChem (7048754) PubChem (92436622) PubChem (93233163) PubChem (93971968) PubChem (133612476) PubChem (7048753) PubChem (7048755) PubChem (9846607) PubChem (162999945) | |||
| 26 | HA, OB, OC, PB (B, F, L) | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 4 | Chemie (SQD) PubChem (25147486) PubChem (25235342) PubChem (42607399) PubChem (159321) PubChem (481096) PubChem (5459390) PubChem (102201395) PubChem (134765349) PubChem (9810997) PubChem (9918745) PubChem (10219110) PubChem (10373133) PubChem (14463145) | |||
| 27 | LC, MC, NC (I, K) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 3 | Chemie (SF4) | |||
| 28 | YC (R) | FE2/S2 (INORGANIC) CLUSTER | non-polymer | 175.8 | 1 | Chemie (FES) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 20 |
| Total formula weight | 480937.7 | |
| Non-Polymers* | Number of molecules | 83 |
| Total formula weight | 88636.6 | |
| All* | Total formula weight | 569574.3 |
