6L7O
cryo-EM structure of cyanobacteria Fd-NDH-1L complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | NAD(P)H-quinone oxidoreductase subunit 1 | polymer | 372 | 40566.0 | 1 | UniProt (Q8DL32) Pfam (PF00146) In PDB | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase I subunit 1,NDH-1 subunit 1,NDH-A |
| 2 | B | NAD(P)H-quinone oxidoreductase subunit 2 | polymer | 515 | 55168.5 | 1 | UniProt (Q8DMR6) Pfam (PF19530) Pfam (PF00361) In PDB | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase subunit 2,NADH-plastoquinone oxidoreductase subunit 2,NDH-1,subunit 2 |
| 3 | C | NAD(P)H-quinone oxidoreductase subunit 3 | polymer | 132 | 15013.9 | 1 | UniProt (Q8DJ02) Pfam (PF00507) In PDB | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase subunit 3,NADH-plastoquinone oxidoreductase subunit 3,NDH-1 subunit 3,NDH-C |
| 4 | D | NAD(P)H-quinone oxidoreductase chain 4 1 | polymer | 529 | 57847.5 | 1 | UniProt (Q8DKY0) Pfam (PF00361) In PDB | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase I,chain 4 1,NDH-1 |
| 5 | E | NAD(P)H-quinone oxidoreductase subunit 4L | polymer | 101 | 11140.3 | 1 | UniProt (Q8DL29) Pfam (PF00420) In PDB | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase subunit 4L,NADH-plastoquinone oxidoreductase subunit 4L,NDH-1,subunit 4L,NDH-E |
| 6 | F | NADH dehydrogenase subunit 5 | polymer | 656 | 72025.4 | 1 | UniProt (Q8DKX9) Pfam (PF00662) Pfam (PF00361) Pfam (PF01010) In PDB | Thermosynechococcus elongatus BP-1 | |
| 7 | G | NADH-quinone oxidoreductase subunit J | polymer | 200 | 21580.6 | 1 | UniProt (Q8DL30) Pfam (PF00499) In PDB | Thermosynechococcus elongatus BP-1 | |
| 8 | H | NAD(P)H-quinone oxidoreductase subunit H | polymer | 394 | 45271.2 | 1 | UniProt (Q8DJD9) Pfam (PF00346) In PDB | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase subunit H,NADH-plastoquinone oxidoreductase subunit H,NDH-1 subunit H,NDH-H |
| 9 | I | NAD(P)H-quinone oxidoreductase subunit I | polymer | 196 | 22444.8 | 1 | UniProt (Q8DL31) Pfam (PF12838) In PDB | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase I subunit I,NDH-1 subunit I,NDH-I |
| 10 | J | NAD(P)H-quinone oxidoreductase subunit J | polymer | 168 | 19363.8 | 1 | UniProt (Q8DJ01) Pfam (PF00329) In PDB | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase subunit J,NADH-plastoquinone oxidoreductase subunit J,NDH-1 subunit J,NDH-J |
| 11 | K | NAD(P)H-quinone oxidoreductase subunit K | polymer | 237 | 25767.0 | 1 | UniProt (Q8DKZ4) Pfam (PF01058) In PDB | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase I subunit K,NDH-1 subunit K,NDH-K |
| 12 | L | NAD(P)H-quinone oxidoreductase subunit L | polymer | 76 | 8575.1 | 1 | UniProt (Q8DKZ3) Pfam (PF10716) In PDB | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase I subunit L,NDH-1 subunit L,NDH-L |
| 13 | M | NAD(P)H-quinone oxidoreductase subunit M | polymer | 111 | 12584.1 | 1 | UniProt (Q8DLN5) Pfam (PF10664) In PDB | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase I subunit M,NDH-M |
| 14 | N | NAD(P)H-quinone oxidoreductase subunit N | polymer | 150 | 16656.2 | 1 | UniProt (Q8DJU2) Pfam (PF11909) In PDB | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase I subunit N,NDH-N |
| 15 | O | NAD(P)H-quinone oxidoreductase subunit O | polymer | 70 | 7877.1 | 1 | UniProt (Q8DMU4) Pfam (PF11910) In PDB | Thermosynechococcus elongatus BP-1 | NAD(P)H dehydrogenase I subunit O,NDH-1 subunit O,NDH-O |
| 16 | P | NAD(P)H-quinone oxidoreductase subunit P | polymer | 44 | 4878.6 | 1 | UniProt (by SIFTS) (V5V507) In PDB | Thermosynechococcus elongatus BP-1 | |
| 17 | Q | NAD(P)H-quinone oxidoreductase subunit Q | polymer | 45 | 4844.7 | 1 | UniProt (by SIFTS) (V5V791) In PDB | Thermosynechococcus elongatus BP-1 | |
| 18 | R | Ferredoxin-1 | polymer | 98 | 10854.0 | 1 | UniProt (P0A3C9) Pfam (PF00111) In PDB | Thermosynechococcus elongatus BP-1 | Ferredoxin I |
| 19 | S | Tlr0636 protein | polymer | 110 | 12462.6 | 1 | UniProt (Q8DL61) Pfam (PF11623) In PDB | Thermosynechococcus elongatus BP-1 | |
| 20 | V | Tlr0472 protein | polymer | 146 | 16016.5 | 1 | UniProt (Q8DLL4) Pfam (PF11210) In PDB | Thermosynechococcus elongatus BP-1 | |
| 21 | F, P, A | BETA-CAROTENE | non-polymer | 536.9 | 3 | Chemie (BCR) | |||
| 22 | B, H, F, A, D | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 9 | Chemie (LHG) | |||
| 23 | A | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 2 | Chemie (DGD) | |||
| 24 | A, D, F, G, B... | Digitonin | non-polymer | 1229.3 | 60 | Chemie (AJP) | |||
| 25 | B | PHYLLOQUINONE | non-polymer | 450.7 | 1 | Chemie (PQN) | |||
| 26 | B, F, L | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 4 | Chemie (SQD) | |||
| 27 | I, K | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 3 | Chemie (SF4) | |||
| 28 | R | FE2/S2 (INORGANIC) CLUSTER | non-polymer | 175.8 | 1 | Chemie (FES) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 20 |
| Total formula weight | 480937.7 | |
| Non-Polymers* | Number of molecules | 83 |
| Total formula weight | 88636.6 | |
| All* | Total formula weight | 569574.3 |
