6KVD
Crystal structure of human nucleosome containing H2A.J
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | I, J | DNA (146-MER) | polymer | 146 | 45053.9 | 2 | Homo sapiens | ||
2 | A, E | Histone H3.1 | polymer | 139 | 15719.4 | 2 | UniProt (P68431) Pfam (PF00125) In PDB | Homo sapiens (Human) | Histone H3/a,Histone H3/b,Histone H3/c,Histone H3/d,Histone H3/f,Histone H3/h,Histone H3/i,Histone H3/j,Histone H3/k,Histone H3/l |
3 | B, F | Histone H4 | polymer | 106 | 11676.7 | 2 | UniProt (P62805) Pfam (PF15511) In PDB | Homo sapiens (Human) | |
4 | C, G | Histone H2A.J | polymer | 132 | 14329.7 | 2 | UniProt (Q9BTM1) Pfam (PF00125) Pfam (PF16211) In PDB | Homo sapiens (Human) | H2a/j |
5 | D, H | Histone H2B type 1-J | polymer | 129 | 14217.5 | 2 | UniProt (P06899) Pfam (PF00125) In PDB | Homo sapiens (Human) | Histone H2B.1,Histone H2B.r,H2B/r |
6 | I, J, D | MANGANESE (II) ION | non-polymer | 54.9 | 13 | Chemie (MN) | |||
7 | G, A, D, E | CHLORIDE ION | non-polymer | 35.5 | 4 | Chemie (CL) | |||
8 | water | water | 18.0 | 292 | Chemie (HOH) |
Sequence modifications
A, E: 0 - 135 (UniProt: P68431)
B, F: 0 - 102 (UniProt: P62805)
C, G: 0 - 128 (UniProt: Q9BTM1)
D, H: 0 - 125 (UniProt: P06899)
PDB | External Database | Details |
---|---|---|
Gly -3 | - | expression tag |
Ser -2 | - | expression tag |
His -1 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -3 | - | expression tag |
Ser -2 | - | expression tag |
His -1 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -3 | - | expression tag |
Ser -2 | - | expression tag |
His -1 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Gly -3 | - | expression tag |
Ser -2 | - | expression tag |
His -1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 10 |
Total formula weight | 201994.5 | |
Non-Polymers* | Number of molecules | 17 |
Total formula weight | 856.0 | |
All* | Total formula weight | 202850.5 |