6KQD
Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 3 nt
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, K, L | DNA-directed RNA polymerase subunit alpha | polymer | 315 | 35056.2 | 4 | UniProt (Q5SHR6) Pfam (PF01193) Pfam (PF01000) Pfam (PF03118) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | RNAP subunit alpha,RNA polymerase subunit alpha,Transcriptase subunit alpha |
| 2 | C, M | DNA-directed RNA polymerase subunit beta | polymer | 1119 | 125436.5 | 2 | UniProt (Q8RQE9) Pfam (PF04563) Pfam (PF04561) Pfam (PF04565) Pfam (PF10385) Pfam (PF00562) Pfam (PF04560) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | RNAP subunit beta,RNA polymerase subunit beta,Transcriptase subunit beta |
| 3 | D, N | DNA-directed RNA polymerase subunit beta' | polymer | 1524 | 170997.4 | 2 | UniProt (Q8RQE8) Pfam (PF04997) Pfam (PF21668) Pfam (PF00623) Pfam (PF04983) Pfam (PF05000) Pfam (PF04998) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | RNAP subunit beta',RNA polymerase subunit beta',Transcriptase subunit beta' |
| 4 | E, O | DNA-directed RNA polymerase subunit omega | polymer | 99 | 11533.3 | 2 | UniProt (Q8RQE7) Pfam (PF01192) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | RNAP omega subunit,RNA polymerase omega subunit,Transcriptase subunit omega |
| 5 | F, P | RNA polymerase sigma factor SigA | polymer | 443 | 50769.4 | 2 | UniProt (Q5SKW1) Pfam (PF00140) Pfam (PF04542) Pfam (PF04539) Pfam (PF04545) In PDB | Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) | |
| 6 | G, Q | DNA (5'-D(*CP*CP*T*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*CP*AP*GP*GP*G)-3') | polymer | 21 | 6440.1 | 2 | synthetic construct | ||
| 7 | H, R | DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*AP*GP*G*)-3') | polymer | 27 | 8421.4 | 2 | synthetic construct | ||
| 8 | I, S | RNA (5'-R(*GP*GP*A)-3') | polymer | 3 | 974.7 | 2 | synthetic construct | ||
| 9 | N, B, D, F, K | MAGNESIUM ION | non-polymer | 24.3 | 7 | Chemie (MG) | |||
| 10 | N, D | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) | |||
| 11 | Q, G | 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE | non-polymer | 347.2 | 2 | Chemie (DG) | |||
| 12 | water | water | 18.0 | 107 | Chemie (HOH) |
Sequence modifications
F, P: 1 - 423 (UniProt: Q5SKW1)
| PDB | External Database | Details |
|---|---|---|
| Met -19 | - | initiating methionine |
| Gly -18 | - | expression tag |
| Ser -17 | - | expression tag |
| Ser -16 | - | expression tag |
| His -15 | - | expression tag |
| His -14 | - | expression tag |
| His -13 | - | expression tag |
| His -12 | - | expression tag |
| His -11 | - | expression tag |
| His -10 | - | expression tag |
| Ser -9 | - | expression tag |
| Ser -8 | - | expression tag |
| Gly -7 | - | expression tag |
| Leu -6 | - | expression tag |
| Val -5 | - | expression tag |
| Pro -4 | - | expression tag |
| Arg -3 | - | expression tag |
| Gly -2 | - | expression tag |
| Ser -1 | - | expression tag |
| His 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 18 |
| Total formula weight | 889370.4 | |
| Non-Polymers* | Number of molecules | 13 |
| Total formula weight | 1126.2 | |
| All* | Total formula weight | 890496.6 |
