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6KNC

PolD-PCNA-DNA (form B)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
DNA polymerase II small subunitpolymer53760772.31UniProt (Q5JET1)
Pfam (PF04042)
Thermococcus kodakarensis KOD1DNA polymerase D DP1 (DNA polymerase II small) subunit, Pol II,Exodeoxyribonuclease small subunit
2B
(B)
DNA polymerase D DP2 (DNA polymerase II large) subunitpolymer1324150418.01Pfam (PF03833)
UniProt (by SIFTS) (Q5JET0)
Thermococcus kodakarensis
3C, D, E
(C, D, E)
DNA polymerase sliding clamp 1polymer24928270.43UniProt (Q5JF32)
Pfam (PF00705)
Pfam (PF02747)
Thermococcus kodakarensis KOD1Proliferating cell nuclear antigen homolog 1,PCNA 1
4F
(F)
pri30DNApolymer309233.01synthetic construct
5G
(G)
temp45DNApolymer309214.91synthetic construct
6H
(A)
FE (III) IONnon-polymer55.81Chemie (FE)
7I, J, K, L
(A, B)
ZINC IONnon-polymer65.44Chemie (ZN)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains7
Total formula weight314449.6
Non-Polymers*Number of molecules5
Total formula weight317.5
All*Total formula weight314767.1
*Water molecules are not included.

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PDB entries from 2025-12-31

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