6KNB
PolD-PCNA-DNA (form A)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | DNA polymerase II small subunit | polymer | 537 | 60772.3 | 1 | UniProt (Q5JET1) Pfam (PF04042) In PDB | Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) | Pol II,Exodeoxyribonuclease small subunit |
| 2 | B | DNA polymerase D DP2 (DNA polymerase II large) subunit | polymer | 1324 | 150418.0 | 1 | Pfam (PF03833) UniProt (by SIFTS) (Q5JET0) In PDB | Thermococcus kodakarensis | |
| 3 | C, D, E | DNA polymerase sliding clamp 1 | polymer | 249 | 28270.4 | 3 | UniProt (Q5JF32) Pfam (PF00705) Pfam (PF02747) In PDB | Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) | Proliferating cell nuclear antigen homolog 1,PCNA 1 |
| 4 | F | pri25DNA | polymer | 30 | 9233.0 | 1 | synthetic construct | ||
| 5 | G | temp35DNA | polymer | 30 | 9214.9 | 1 | synthetic construct | ||
| 6 | A | FE (III) ION | non-polymer | 55.8 | 1 | Chemie (FE) | |||
| 7 | A, B | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) |
Sequence modifications
A: 263 - 735 (UniProt: Q5JET1)
| PDB | External Database | Details |
|---|---|---|
| Met 199 | - | initiating methionine |
| Leu 200 | - | expression tag |
| Val 201 | - | expression tag |
| Glu 202 | - | expression tag |
| Asp 203 | - | expression tag |
| Leu 204 | - | expression tag |
| Leu 205 | - | expression tag |
| Lys 206 | - | expression tag |
| Asn 207 | - | expression tag |
| Asn 208 | - | expression tag |
| Tyr 209 | - | expression tag |
| Leu 210 | - | expression tag |
| Ile 211 | - | expression tag |
| Thr 212 | - | expression tag |
| Pro 213 | - | expression tag |
| Ser 214 | - | expression tag |
| Ala 215 | - | expression tag |
| Tyr 216 | - | expression tag |
| Tyr 217 | - | expression tag |
| Leu 218 | - | expression tag |
| Leu 219 | - | expression tag |
| Ser 220 | - | expression tag |
| Asp 221 | - | expression tag |
| His 222 | - | expression tag |
| Tyr 223 | - | expression tag |
| Lys 224 | - | expression tag |
| Lys 225 | - | expression tag |
| Ala 226 | - | expression tag |
| Phe 227 | - | expression tag |
| Thr 228 | - | expression tag |
| Leu 229 | - | expression tag |
| Ala 230 | - | expression tag |
| Glu 231 | - | expression tag |
| Leu 232 | - | expression tag |
| Ile 233 | - | expression tag |
| Lys 234 | - | expression tag |
| Phe 235 | - | expression tag |
| Ala 236 | - | expression tag |
| Lys 237 | - | expression tag |
| Asn 238 | - | expression tag |
| Arg 239 | - | expression tag |
| Gly 240 | - | expression tag |
| Thr 241 | - | expression tag |
| Phe 242 | - | expression tag |
| Val 243 | - | expression tag |
| Val 244 | - | expression tag |
| Asp 245 | - | expression tag |
| Ser 246 | - | expression tag |
| Asn 247 | - | expression tag |
| Leu 248 | - | expression tag |
| Ala 249 | - | expression tag |
| Arg 250 | - | expression tag |
| Glu 251 | - | expression tag |
| Phe 252 | - | expression tag |
| Leu 253 | - | expression tag |
| Ala 254 | - | expression tag |
| Glu 255 | - | expression tag |
| Lys 256 | - | expression tag |
| Gly 257 | - | expression tag |
| Ile 258 | - | expression tag |
| Ile 259 | - | expression tag |
| Ser 260 | - | expression tag |
| Ser 261 | - | expression tag |
| Gly 262 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 7 |
| Total formula weight | 314449.6 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 317.5 | |
| All* | Total formula weight | 314767.1 |
