6KMM
Crystal Structure of HEPES bound Dye Decolorizing peroxidase from Bacillus subtilis
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | Deferrochelatase/peroxidase EfeB | polymer | 363 | 40235.3 | 6 | UniProt (A0A4P9FDJ4) Pfam (PF04261) Pfam (PF20628) UniProt (by SIFTS) (P39597) | Bacillus subtilis | |
| 2 | DA, G, HA, M, Q... (E, A, F, B, C...) | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 6 | Chemie (HEM) | |||
| 3 | EA, H, IA, N, R... (E, A, F, B, C...) | OXYGEN MOLECULE | non-polymer | 32.0 | 6 | Chemie (OXY) | |||
| 4 | AA, I, JA, S, Z (D, A, F, C) | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | non-polymer | 238.3 | 5 | Chemie (EPE) | |||
| 5 | FA, GA, J, K, L... (E, A, C) | GLYCEROL | non-polymer | 92.1 | 6 | Chemie (GOL) | |||
| 6 | O (B) | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
| 7 | BA, P, V (D, B, C) | (4S)-2-METHYL-2,4-PENTANEDIOL | non-polymer | 118.2 | 3 | Chemie (MPD) | |||
| 8 | U (C) | PHOSPHATE ION | non-polymer | 95.0 | 1 | Chemie (PO4) | |||
| 9 | CA, W (D, C) | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) | |||
| 10 | KA, LA, MA, NA, OA... (A, B, C, D, E...) | water | water | 18.0 | 2096 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F: 2 - 363 (UniProt: A0A4P9FDJ4)
| PDB | External Database | Details |
|---|---|---|
| Met 1 | - | initiating methionine |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 241411.9 | |
| Non-Polymers* | Number of molecules | 30 |
| Total formula weight | 6178.4 | |
| All* | Total formula weight | 247590.3 |
