6KBZ
Crystal structure of yedK with ssDNA containing a tetrahydrofuran abasic site
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | B, D, F, H | SOS response-associated protein | polymer | 227 | 25606.9 | 4 | UniProt (A0A2S5ZH06) Pfam (PF02586) UniProt (by SIFTS) (P76318) In PDB | Escherichia coli | E.coli yedK |
| 2 | A, C, E, G | 5'-D (*CP*GP*GP*TP* (3DR) P*GP*AP*TP*TP*C)-3' | polymer | 10 | 2926.9 | 4 | Escherichia coli | ssDNA_THF | |
| 3 | B, F, H | MAGNESIUM ION | non-polymer | 24.3 | 4 | Chemie (MG) | |||
| 4 | water | water | 18.0 | 1086 | Chemie (HOH) |
Sequence modifications
B, D, F, H: 2 - 222 (UniProt: A0A2S5ZH06)
| PDB | External Database | Details |
|---|---|---|
| Leu 223 | - | expression tag |
| Glu 224 | - | expression tag |
| Val 225 | - | expression tag |
| Leu 226 | - | expression tag |
| Phe 227 | - | expression tag |
| Gln 228 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 114135.2 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 97.2 | |
| All* | Total formula weight | 114232.4 |
