6KAF

C2S2M2N2-type PSII-LHCII

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, VA (r, R)	Chlorophyll a-b binding protein CP29	polymer	280	29970.8	2	UniProt (Q93WD2)	Chlamydomonas reinhardtii	Lhcbm4
2	B, Q (a, A)	Photosystem II protein D1	polymer	352	39066.3	2	UniProt (P07753) Pfam (PF00124)	Chlamydomonas reinhardtii	PSII D1 protein,32 kDa thylakoid membrane protein,Photosystem II Q(B) protein
3	AB, C (d, D)	Photosystem II D2 protein	polymer	352	39474.0	2	UniProt (P06007) Pfam (PF00124)	Chlamydomonas reinhardtii	PSII D2 protein,Photosystem Q(A) protein
4	D, S (f, F)	Cytochrome b559 subunit beta	polymer	44	4986.0	2	UniProt (Q08363) Pfam (PF00283)	Chlamydomonas reinhardtii	PSII reaction center subunit VI
5	E, T (h, H)	Photosystem II reaction center protein H	polymer	88	9445.1	2	UniProt (P22666) Pfam (PF00737)	Chlamydomonas reinhardtii	PSII-H,Photosystem II 8 kDa phosphoprotein
6	F, U (i, I)	Photosystem II reaction center protein I	polymer	37	4245.0	2	UniProt (P59763) Pfam (PF02532)	Chlamydomonas reinhardtii	PSII-I,PSII 4.8 kDa protein
7	G, V (j, J)	Photosystem II reaction center protein J, PsbJ	polymer	50	5725.7	2		Chlamydomonas reinhardtii
8	H, W (k, K)	Photosystem II reaction center protein K	polymer	46	5062.1	2	UniProt (P18263) Pfam (PF02533)	Chlamydomonas reinhardtii	PSII-K
9	I, X (l, L)	Photosystem II reaction center protein L	polymer	38	4431.2	2	UniProt (P32974) Pfam (PF02419)	Chlamydomonas reinhardtii	PSII-L
10	J, Y (m, M)	Photosystem II reaction center protein M	polymer	34	3762.4	2	UniProt (P92277) Pfam (PF05151)	Chlamydomonas reinhardtii	PSII-M
11	K, ZA (o, O)	Oxygen-evolving enhancer protein 1 of photosystem II	polymer	291	30614.7	2	UniProt (A8J0E4) Pfam (PF01716)	Chlamydomonas reinhardtii
12	L, Z (t, T)	Photosystem II reaction center protein T	polymer	31	3639.4	2	UniProt (P37256) Pfam (PF01405)	Chlamydomonas reinhardtii	PSII-T
13	AA, M (w, W)	Photosystem II reaction center W protein, chloroplastic	polymer	115	12155.1	2	UniProt (Q9SPI9)	Chlamydomonas reinhardtii	PSII 6.1 kDa protein
14	BB, N (x, X)	4.1 kDa photosystem II subunit	polymer	101	9894.7	2	UniProt (A8I846) Pfam (PF06596)	Chlamydomonas reinhardtii
15	BA, O (z, Z)	Photosystem II reaction center protein Z	polymer	62	6565.9	2	UniProt (P92276) Pfam (PF01737)	Chlamydomonas reinhardtii	PSII-Z
16	CA, P (Y, y)	Photosystem II reaction center protein 30, Psb30	polymer	33	3333.1	2		Chlamydomonas reinhardtii
17	DB, R (E, e)	Cytochrome b559 subunit alpha	polymer	82	9312.6	2	UniProt (P48268) Pfam (PF00283) Pfam (PF00284)	Chlamydomonas reinhardtii	PSII reaction center subunit V
18	DA, EA, FA, GA, HA... (1, 2, 3, 4, 5...)	Chlorophyll a-b binding protein, chloroplastic	polymer	257	27405.0	18	UniProt (Q93WL4) Pfam (PF00504)	Chlamydomonas reinhardtii
19	FB, WA (S, s)	Chlorophyll a-b binding protein, chloroplastic	polymer	289	30742.8	2	UniProt (Q9FEK6) Pfam (PF00504)	Chlamydomonas reinhardtii
20	EB, XA (C, c)	Photosystem II CP43 reaction center protein	polymer	461	50680.7	2	UniProt (P10898) Pfam (PF00421)	Chlamydomonas reinhardtii	PSII 43 kDa protein,Protein CP-43,Protein P6
21	CB, YA (B, b)	Photosystem II CP47 reaction center protein	polymer	508	56159.8	2	UniProt (P37255) Pfam (PF00421)	Chlamydomonas reinhardtii	PSII 47 kDa protein,Protein CP-47
22	AF, AH, AJ, AL, AN... (2, 5, p, P, N...)	CHLOROPHYLL A	non-polymer		893.5	252	Chemie (CLA)
23	BF, BH, CF, CH, EW... (2, 5, s, p, P...)	(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL	non-polymer		568.9	30	Chemie (LUT) PubChem (181579) PubChem (441664) PubChem (6325550) PubChem (6433159) PubChem (10210008) PubChem (10257404) PubChem (12359017) PubChem (16061195) PubChem (16061196) PubChem (16061204) PubChem (24728610) PubChem (25202165) PubChem (44481270) PubChem (177565809) PubChem (177696530) PubChem (46835684) PubChem (25245095) PubChem (53477760) PubChem (57922343) PubChem (31380) PubChem (448437) PubChem (89305995) PubChem (91007743) PubChem (91330154) PubChem (91467158) PubChem (5281243) PubChem (93535598) PubChem (94424894) PubChem (100935514) PubChem (101351907) PubChem (101351906) PubChem (53477744) PubChem (53477774) PubChem (5368396) PubChem (131801656) PubChem (12085680) PubChem (139335388) PubChem (162679657) PubChem (162945700) PubChem (162945708) PubChem (175679236) PubChem (175679086) PubChem (90820720) PubChem (91240120) PubChem (91519940) PubChem (93971688) PubChem (93971689) PubChem (93971690) PubChem (93971691) PubChem (94424892) PubChem (94424893) PubChem (101351905) PubChem (101351908) PubChem (101351909) PubChem (101351910) PubChem (101727094) PubChem (102093134) PubChem (102514741) PubChem (125183271) PubChem (125183272) PubChem (125183273) PubChem (125183613) PubChem (125183614) PubChem (126970006) PubChem (131801655) PubChem (139595700) PubChem (152743345) PubChem (156583347) PubChem (159139983) PubChem (162945701) PubChem (162945702) PubChem (162945703) PubChem (162945704) PubChem (162945705) PubChem (162945706) PubChem (162945707) PubChem (162945709) PubChem (169423521) PubChem (169954357) PubChem (172748694)
24	AO, DF, DH, DQ, HJ... (G, 2, 5, g, p...)	(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL	non-polymer		600.9	20	Chemie (XAT) PubChem (179930) PubChem (448438) PubChem (5282218) PubChem (5315242) PubChem (6384269) PubChem (6442428) PubChem (9851662) PubChem (12358665) PubChem (12358669) PubChem (24970201) PubChem (46936684) PubChem (51346155) PubChem (92096) PubChem (98049827) PubChem (101341889) PubChem (101341891) PubChem (53477762) PubChem (6852159) PubChem (126456015) PubChem (12358664) PubChem (155293357) PubChem (162964874) PubChem (163187351) PubChem (177696491) PubChem (98049828) PubChem (101341888) PubChem (101341890) PubChem (101341892) PubChem (101341893) PubChem (101341894) PubChem (101341895) PubChem (125183415) PubChem (125183416) PubChem (125183417) PubChem (129888894) PubChem (137331554) PubChem (152743429) PubChem (162964869) PubChem (162964870) PubChem (162964871) PubChem (162964872) PubChem (162964873) PubChem (162964875) PubChem (162964876) PubChem (163186889) PubChem (169544055) PubChem (171036315) PubChem (172817291)
25	AM, BO, EF, EH, EQ... (Q, G, 2, 5, g...)	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE	non-polymer		723.0	40	Chemie (LHG) PubChem (446440) PubChem (9547104) PubChem (11846227) PubChem (46936292) PubChem (65144) PubChem (13305396) PubChem (73416066) PubChem (138986743)
26	AG, AI, AK, AR, BG... (3, 6, q, R, Q...)	CHLOROPHYLL B	non-polymer		907.5	122	Chemie (CHL)
27	AP, BP, LF, LH, LQ... (u, 2, 5, R, s...)	(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL	non-polymer		600.9	16	Chemie (NEX) PubChem (4481261) PubChem (5282217) PubChem (5320120) PubChem (10908146) PubChem (12358959) PubChem (177697037) PubChem (21158515) PubChem (159749) PubChem (52948899) PubChem (5281247) PubChem (101866355) PubChem (6384259) PubChem (162910894) PubChem (162910891) PubChem (162910895) PubChem (101052392) PubChem (101866356) PubChem (101866357) PubChem (102060371) PubChem (139033583) PubChem (162910892) PubChem (162910893) PubChem (162910896) PubChem (169502056) PubChem (172012198)
28	FD, ZB (A, a)	FE (II) ION	non-polymer		55.8	2	Chemie (FE2) PubChem (27284)
29	AC, BC, GD, HD (a, A)	CHLORIDE ION	non-polymer		35.5	4	Chemie (CL) PubChem (312)
30	FC, LD, PC, PT (a, A, d, D)	PHEOPHYTIN A	non-polymer		871.2	4	Chemie (PHO)
31	AD, DD, ED, HC, IS... (t, x, z, a, C...)	BETA-CAROTENE	non-polymer		536.9	22	Chemie (BCR) PubChem (573) PubChem (5315709) PubChem (5353436) PubChem (5356616) PubChem (5927371) PubChem (6477957) PubChem (9828626) PubChem (10256668) PubChem (12305639) PubChem (12305640) PubChem (12305642) PubChem (12305644) PubChem (12305647) PubChem (12305652) PubChem (21672398) PubChem (176490061) PubChem (177696266) PubChem (46783370) PubChem (46846294) PubChem (5280489) PubChem (92863345) PubChem (54603957) PubChem (54612003) PubChem (124919640) PubChem (146673260) PubChem (152743364) PubChem (160505766) PubChem (86765360) PubChem (91827292) PubChem (92863346) PubChem (92863347) PubChem (92863348) PubChem (100990628) PubChem (101525094) PubChem (101525095) PubChem (124919639) PubChem (129651951) PubChem (132274419) PubChem (145925599) PubChem (159562859) PubChem (172654026) PubChem (172878405) PubChem (173398668)
32	IC, LC, QD, TR, XD... (a, A, C, L, l...)	1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL	non-polymer		795.1	8	Chemie (SQD) PubChem (5459390) PubChem (9810997) PubChem (9918745) PubChem (10219110) PubChem (10373133) PubChem (14463145) PubChem (25147486) PubChem (25235342) PubChem (42607399) PubChem (159321) PubChem (481096) PubChem (134765349) PubChem (102201395)
33	JC, OD, SC, TT (a, A, d, D)	2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE	non-polymer		749.2	4	Chemie (PL9) PubChem (20286) PubChem (5375177) PubChem (6323474) PubChem (6325820) PubChem (6433402) PubChem (23304240) PubChem (21881166)
34	AE, BD, KC, LT, NS... (W, w, a, B, C...)	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE	non-polymer		787.2	14	Chemie (LMG)
35	MC, QT (a, D)	BICARBONATE ION	non-polymer		61.0	2	Chemie (BCT) PubChem (769)
36	LS, MS, OC, OV, PV... (C, a, c, B, A...)	DIGALACTOSYL DIACYL GLYCEROL (DGDG)	non-polymer		949.3	10	Chemie (DGD) PubChem (448441) PubChem (24865462) PubChem (24865463) PubChem (46936671) PubChem (50904896) PubChem (447899) PubChem (4629344) PubChem (53480668) PubChem (15991538) PubChem (154573294) PubChem (171123158) PubChem (134746152) PubChem (140529801)
37	TD, XU (E, e)	PROTOPORPHYRIN IX CONTAINING FE	non-polymer		616.5	2	Chemie (HEM)

Contents of the asymmetric unit

Polymers	Number of chains	58
	Total formula weight	1211825.6
Non-Polymers*	Number of molecules	552
	Total formula weight	450262.5
All*	Total formula weight	1662088.1

*Water molecules are not included.