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6K1I

Human nucleosome core particle with gammaH2A.X variant

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, E
(A, E)
Histone H3.1polymer13915719.42UniProt (P68431)
Pfam (PF00125)
Homo sapiens (Human)Histone H3/a,Histone H3/b,Histone H3/c,Histone H3/d,Histone H3/f,Histone H3/h,Histone H3/i,Histone H3/j,Histone H3/k,Histone H3/l
2B, F
(B, F)
Histone H4polymer10611676.72UniProt (P62805)
Pfam (PF15511)
Homo sapiens (Human)
3C, G
(C, G)
Histone H2AXpolymer14615454.92UniProt (P16104)
Pfam (PF00125)
Pfam (PF16211)
Homo sapiens (Human)H2a/x,Histone H2A.X
4D, H
(D, H)
Histone H2B type 1-Jpolymer12914217.52UniProt (P06899)
Pfam (PF00125)
Homo sapiens (Human)Histone H2B.1,Histone H2B.r,H2B/r
5I
(I)
DNA (147-MER)polymer14745193.81Homo sapiens
6J
(J)
DNA (147-MER)polymer14745554.01Homo sapiens
7K, M
(D, G)
CHLORIDE IONnon-polymer35.52Chemie (CL)
8AA, BA, CA, DA, EA...
(J, E, I)
MANGANESE (II) IONnon-polymer54.923Chemie (MN)
9KA, W
(J, I)
POTASSIUM IONnon-polymer39.12Chemie (K)
10LA, MA, NA, OA, PA...
(A, B, C, D, E...)
waterwater18.030Chemie (HOH)
Sequence modifications
A, E: 0 - 135 (UniProt: P68431)
PDBExternal DatabaseDetails
Gly -3-expression tag
Ser -2-expression tag
His -1-expression tag
B, F: 0 - 102 (UniProt: P62805)
PDBExternal DatabaseDetails
Gly -3-expression tag
Ser -2-expression tag
His -1-expression tag
C, G: 0 - 142 (UniProt: P16104)
PDBExternal DatabaseDetails
Gly -3-expression tag
Ser -2-expression tag
His -1-expression tag
D, H: -3 - 122 (UniProt: P06899)
PDBExternal DatabaseDetails
Gly -6-expression tag
Ser -5-expression tag
His -4-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains10
Total formula weight204884.9
Non-Polymers*Number of molecules27
Total formula weight1412.7
All*Total formula weight206297.6
*Water molecules are not included.

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PDB entries from 2026-01-28

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