6J40

Structure of C2S2M2-type PSII-FCPII supercomplex from diatom

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, Y (A, a)	Photosystem II reaction center protein D1	polymer	344	38183.5	2		Chaetoceros gracilis
2	B, Z (B, b)	Photosystem II chlorophyll protein CP47	polymer	509	56475.3	2		Chaetoceros gracilis
3	AA, C (C, c)	Photosystem II chlorophyll protein CP43	polymer	471	51947.3	2		Chaetoceros gracilis
4	BA, D (D, d)	Photosystem II reaction center protein D2	polymer	351	39069.5	2		Chaetoceros gracilis
5	CA, E (E, e)	Cytochrome b559 subunit alpha	polymer	84	9507.7	2		Chaetoceros gracilis
6	DA, F (F, f)	Cytochrome b559 subunit beta	polymer	43	4912.8	2		Chaetoceros gracilis
7	EA, G (H, h)	Photosystem II reaction center protein H	polymer	67	7418.8	2	UniProt (B7XBY7)	Chaetoceros gracilis	PSII-H
8	FA, H (I, i)	Photosystem II reaction center protein I	polymer	38	4427.2	2		Chaetoceros gracilis
9	GA, I (J, j)	Photosystem II reaction center protein J	polymer	39	4093.8	2		Chaetoceros gracilis
10	HA, J (K, k)	Photosystem II reaction center protein K	polymer	44	4978.0	2		Chaetoceros gracilis
11	IA, K (L, l)	Photosystem II reaction center protein L	polymer	38	4367.1	2		Chaetoceros gracilis
12	JA, L (M, m)	Photosystem II reaction center protein M	polymer	131	14180.4	2		Chaetoceros gracilis
13	KA, M (O, o)	Extrinsic protein in photosystem II	polymer	248	26762.3	2	UniProt (B6ZHE8)	Chaetoceros gracilis	Extrinsic protein O of oxygen-evolving complex
14	LA, N (T, t)	Photosystem II reaction center protein T	polymer	31	3711.5	2		Chaetoceros gracilis
15	MA, O (U, u)	Extrinsic protein in photosystem II	polymer	93	10137.5	2	UniProt (B6ZHF0)	Chaetoceros gracilis	Extrinsic protein U of oxygen-evolving complex
16	NA, P (V, v)	Cytochrome c-550	polymer	137	14893.8	2	UniProt (B6ZHF4)	Chaetoceros gracilis	Extrinsic protein V of oxygen-evolving complex
17	OA, Q (Y, y)	Photosystem II reaction center protein Ycf12	polymer	34	3609.5	2		Chaetoceros gracilis
18	PA, R (X, x)	Photosystem II reaction center X protein	polymer	38	3859.6	2	UniProt (B6ZHF2)	Chaetoceros gracilis	Photosystem II reaction center protein X
19	QA, S (Z, z)	Photosystem II reaction center protein Z	polymer	61	6528.9	2		Chaetoceros gracilis
20	RA, T (Q, q)	Extrinsic protein in photosystem II	polymer	155	17088.1	2	UniProt (B6ZHE9)	Chaetoceros gracilis	Extrinsic protein Q of oxygen-evolving complex
21	SA, U (W, w)	Photosystem II reaction center protein W	polymer	72	7848.7	2		Chaetoceros gracilis
22	TA, V (0, 5)	Unknown protein 0	polymer	31	2656.3	2		Chaetoceros gracilis
23	UA, W (1, 6)	Unknown protein 1	polymer	30	2571.2	2		Chaetoceros gracilis
24	VA, X (2, 7)	Unknown protein 2	polymer	10	869.1	2		Chaetoceros gracilis
25	AB, BB, CB, DB, HB... (11, 12, 13, 14, 15...)	Fucoxanthin chlorophyll a/c-binding protein Lhcf1, FCP1	polymer	207	22098.2	16		Chaetoceros gracilis
26	EB, PB (19, 39)	Fucoxanthin chlorophyll a/c-binding protein monomer 1	polymer	215	18315.5	2		Chaetoceros gracilis
27	FB, QB (20, 40)	Fucoxanthin chlorophyll a/c-binding protein monomer 2	polymer	143	12188.0	2		Chaetoceros gracilis
28	GB, RB (21, 41)	Fucoxanthin chlorophyll a/c-binding protein monomer 3	polymer	155	13209.3	2		Chaetoceros gracilis
29	SB, UE (A, a)	FE (II) ION	non-polymer		55.8	2	Chemie (FE2) PubChem (27284)
30	AD, AG, AI, AK, AL... (C, c, 11, 14, 16...)	CHLOROPHYLL A	non-polymer		893.5	290	Chemie (CLA)
31	AH, UB, WD, ZG (d, A, D)	PHEOPHYTIN A	non-polymer		871.2	4	Chemie (PHO)
32	AC, BF, DE, EE, IH... (A, a, F, H, f...)	BETA-CAROTENE	non-polymer		536.9	24	Chemie (BCR) PubChem (573) PubChem (21672398) PubChem (176490061) PubChem (177696266) PubChem (46783370) PubChem (46846294) PubChem (54603957) PubChem (54612003) PubChem (5315709) PubChem (5353436) PubChem (5356616) PubChem (5927371) PubChem (86765360) PubChem (6477957) PubChem (9828626) PubChem (91827292) PubChem (10256668) PubChem (92863346) PubChem (92863347) PubChem (92863348) PubChem (12305639) PubChem (12305640) PubChem (12305642) PubChem (12305644) PubChem (12305647) PubChem (12305652) PubChem (5280489) PubChem (92863345) PubChem (100990628) PubChem (101525094) PubChem (101525095) PubChem (124919640) PubChem (124919639) PubChem (129651951) PubChem (132274419) PubChem (146673260) PubChem (152743364) PubChem (160505766) PubChem (145925599) PubChem (159562859) PubChem (172654026) PubChem (172878405) PubChem (173398668)
33	JE, MH, VC, VF, XB... (L, l, B, b, A...)	1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL	non-polymer		795.1	6	Chemie (SQD) PubChem (25147486) PubChem (25235342) PubChem (42607399) PubChem (5459390) PubChem (159321) PubChem (9810997) PubChem (9918745) PubChem (481096) PubChem (10219110) PubChem (10373133) PubChem (14463145) PubChem (102201395) PubChem (134765349)
34	YB, ZE (A, a)	BICARBONATE ION	non-polymer		61.0	2	Chemie (BCT) PubChem (769)
35	AF, FH, HE, IE, NH... (a, d, L, l, B...)	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE	non-polymer		723.0	8	Chemie (LHG) PubChem (446440) PubChem (46936292) PubChem (73416066) PubChem (65144) PubChem (9547104) PubChem (11846227) PubChem (13305396) PubChem (138986743)
36	BE, GH, LE, MI, PH... (D, d, M, 12, m...)	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE	non-polymer		787.2	14	Chemie (LMG)
37	ZC, ZF (C, c)	CA-MN4-O5 CLUSTER	non-polymer		339.8	2	Chemie (OEX)
38	FE, GE, KH, LH, OD... (H, J, h, j, C...)	DIGALACTOSYL DIACYL GLYCEROL (DGDG)	non-polymer		949.3	8	Chemie (DGD) PubChem (24865462) PubChem (24865463) PubChem (448441) PubChem (50904896) PubChem (53480668) PubChem (46936671) PubChem (447899) PubChem (4629344) PubChem (15991538) PubChem (134746152) PubChem (154573294) PubChem (140529801) PubChem (171123158)
39	AE, BH, EH, XD (D, d)	2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE	non-polymer		749.2	4	Chemie (PL9) PubChem (20286) PubChem (23304240) PubChem (21881166) PubChem (5375177) PubChem (6323474) PubChem (6325820) PubChem (6433402)
40	CE, HH, ME, RH (E, e, V, v)	PROTOPORPHYRIN IX CONTAINING FE	non-polymer		616.5	4	Chemie (HEM)
41	AJ, AM, AN, AO, AQ... (12, 17, 19, 21, 33...)	(3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate	non-polymer		658.9	118	Chemie (A86) PubChem (21776532) PubChem (91530) PubChem (46781664) PubChem (541529) PubChem (59370904) PubChem (59438846) PubChem (177442568) PubChem (89808300) PubChem (90784335) PubChem (10009558) PubChem (88873479) PubChem (91266697) PubChem (15559433) PubChem (15559434) PubChem (15559435) PubChem (5281239) PubChem (101608998) PubChem (102200897) PubChem (5364094) PubChem (124298579) PubChem (124298578) PubChem (124298576) PubChem (102200898) PubChem (102232483) PubChem (125183403) PubChem (9961263) PubChem (123264561) PubChem (124298577) PubChem (140222158) PubChem (15559432) PubChem (162962337) PubChem (163285374) PubChem (138115313) PubChem (140222160) PubChem (154828419) PubChem (162962338) PubChem (162962339) PubChem (162962340) PubChem (162962341) PubChem (172812670)
42	NI, VO (12, 32)	DODECYL-ALPHA-D-MALTOSIDE	non-polymer		510.6	2	Chemie (LMU) PubChem (16220143) PubChem (114880) PubChem (24802120) PubChem (25021193) PubChem (44119948) PubChem (445456) PubChem (46936627) PubChem (53393702) PubChem (56845466) PubChem (3481630) PubChem (58112562) PubChem (58253045) PubChem (60087035) PubChem (59615220) PubChem (68322761) PubChem (68338004) PubChem (68441652) PubChem (70796428) PubChem (70813879) PubChem (70839937) PubChem (2802066) PubChem (75487624) PubChem (89796216) PubChem (9849225) PubChem (91094859) PubChem (91608950) PubChem (10413991) PubChem (90817611) PubChem (95566088) PubChem (95566089) PubChem (95566090) PubChem (96327540) PubChem (97038234) PubChem (97038235) PubChem (97294875) PubChem (98046621) PubChem (98046622) PubChem (98046623) PubChem (100976848) PubChem (101111379) PubChem (101111381) PubChem (95566087) PubChem (102565427) PubChem (102219025) PubChem (117716045) PubChem (117753833) PubChem (118443377) PubChem (123281924) PubChem (124184997) PubChem (124196217) PubChem (124196220) PubChem (126735853) PubChem (126735860) PubChem (129720403) PubChem (140505128) PubChem (153835411) PubChem (134694723) PubChem (155885597) PubChem (140479759) PubChem (140841257) PubChem (169619620) PubChem (154810097) PubChem (159812235) PubChem (173767704) PubChem (173885518) PubChem (163184859)

Contents of the asymmetric unit

Polymers	Number of chains	70
	Total formula weight	1121192.4
Non-Polymers*	Number of molecules	488
	Total formula weight	389798.9
All*	Total formula weight	1510991.3

*Water molecules are not included.