6J3Y
Structure of C2S2-type PSII-FCPII supercomplex from diatom
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, a | Photosystem II reaction center protein D1 | polymer | 344 | 38183.5 | 2 | Chaetoceros gracilis | ||
2 | B, b | Photosystem II chlorophyll protein CP47 | polymer | 509 | 56475.3 | 2 | Chaetoceros gracilis | ||
3 | C, c | Photosystem II chlorophyll protein CP43 | polymer | 471 | 51947.3 | 2 | Chaetoceros gracilis | ||
4 | D, d | Photosystem II reaction center protein D2 | polymer | 351 | 39069.5 | 2 | Chaetoceros gracilis | ||
5 | E, e | Cytochrome b559 subunit alpha | polymer | 84 | 9507.7 | 2 | Chaetoceros gracilis | ||
6 | F, f | Cytochrome b559 subunit beta | polymer | 43 | 4912.8 | 2 | Chaetoceros gracilis | ||
7 | H, h | Photosystem II reaction center protein H | polymer | 67 | 7418.8 | 2 | UniProt (B7XBY7) Pfam (PF00737) In PDB | Chaetoceros gracilis | PSII-H |
8 | I, i | Photosystem II reaction center protein I | polymer | 38 | 4427.2 | 2 | Chaetoceros gracilis | ||
9 | J, j | Photosystem II reaction center protein J | polymer | 39 | 4093.8 | 2 | Chaetoceros gracilis | ||
10 | K, k | Photosystem II reaction center protein K | polymer | 44 | 4978.0 | 2 | Chaetoceros gracilis | ||
11 | L, l | Photosystem II reaction center protein L | polymer | 38 | 4367.1 | 2 | Chaetoceros gracilis | ||
12 | M, m | Photosystem II reaction center protein M | polymer | 131 | 14180.4 | 2 | Chaetoceros gracilis | ||
13 | O, o | Extrinsic protein in photosystem II | polymer | 248 | 26762.3 | 2 | UniProt (B6ZHE8) Pfam (PF01716) In PDB | Chaetoceros gracilis | Extrinsic protein O of oxygen-evolving complex |
14 | T, t | Photosystem II reaction center protein T | polymer | 31 | 3711.5 | 2 | Chaetoceros gracilis | ||
15 | U, u | Extrinsic protein in photosystem II | polymer | 93 | 10137.5 | 2 | UniProt (B6ZHF0) Pfam (PF06514) In PDB | Chaetoceros gracilis | Extrinsic protein U of oxygen-evolving complex |
16 | V, v | Cytochrome c-550 | polymer | 137 | 14893.8 | 2 | UniProt (B6ZHF4) Pfam (PF14495) In PDB | Chaetoceros gracilis | Extrinsic protein V of oxygen-evolving complex,Cytochrome c550 |
17 | Y, y | Photosystem II reaction center protein Ycf12 | polymer | 34 | 3609.5 | 2 | Chaetoceros gracilis | ||
18 | X, x | Photosystem II reaction center X protein | polymer | 38 | 3859.6 | 2 | UniProt (B6ZHF2) Pfam (PF06596) In PDB | Chaetoceros gracilis | Photosystem II reaction center protein X |
19 | Z, z | Photosystem II reaction center protein Z | polymer | 61 | 6528.9 | 2 | Chaetoceros gracilis | ||
20 | Q, q | Extrinsic protein in photosystem II | polymer | 155 | 17088.1 | 2 | UniProt (B6ZHE9) In PDB | Chaetoceros gracilis | Extrinsic protein Q of oxygen-evolving complex |
21 | W, w | Photosystem II reaction center protein W | polymer | 72 | 7848.7 | 2 | Chaetoceros gracilis | ||
22 | 0, 5 | Unknown protein 0 | polymer | 31 | 2656.3 | 2 | Chaetoceros gracilis | ||
23 | 1, 6 | Unknown protein 1 | polymer | 30 | 2571.2 | 2 | Chaetoceros gracilis | ||
24 | 2, 7 | Unknown protein 2 | polymer | 10 | 869.1 | 2 | Chaetoceros gracilis | ||
25 | 11, 12, 13, 14, 31... | Fucoxanthin chlorophyll a/c-binding protein Lhcf1, FCP1 | polymer | 207 | 22098.2 | 8 | Chaetoceros gracilis | ||
26 | a, A | FE (II) ION | non-polymer | 55.8 | 2 | Chemie (FE2) | |||
27 | B, b, w, 12, 33... | CHLOROPHYLL A | non-polymer | 893.5 | 158 | Chemie (CLA) | |||
28 | d, a, A, D | PHEOPHYTIN A | non-polymer | 871.2 | 4 | Chemie (PHO) | |||
29 | b, c, B, C, a... | BETA-CAROTENE | non-polymer | 536.9 | 24 | Chemie (BCR) | |||
30 | b, B, a, A, l... | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 6 | Chemie (SQD) | |||
31 | a, A | BICARBONATE ION | non-polymer | 61.0 | 2 | Chemie (BCT) | |||
32 | b, B, a, A, l... | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 8 | Chemie (LHG) | |||
33 | W, C, b, B, 32... | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 14 | Chemie (LMG) | |||
34 | c, C | CA-MN4-O5 CLUSTER | non-polymer | 339.8 | 2 | Chemie (OEX) | |||
35 | C, c, h, j, H... | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 8 | Chemie (DGD) | |||
36 | d, D | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE | non-polymer | 749.2 | 4 | Chemie (PL9) | |||
37 | f, E, v, V | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 4 | Chemie (HEM) | |||
38 | 14, 31, 34, 12, 32... | (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'-yl acetate | non-polymer | 658.9 | 48 | Chemie (A86) | |||
39 | 32, 12 | DODECYL-ALPHA-D-MALTOSIDE | non-polymer | 510.6 | 2 | Chemie (LMU) |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 56 |
Total formula weight | 856981.3 | |
Non-Polymers* | Number of molecules | 286 |
Total formula weight | 225734.9 | |
All* | Total formula weight | 1082716.2 |