Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | 1 | stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA | polymer | 4458 | 1445685.0 | 1 | GenBank (1370526422) GenBank (1063812051) | Escherichia coli | |
2 | 3 | 5S ribosomal RNA | polymer | 120 | 38790.1 | 1 | GenBank (1403738069) | Escherichia coli | |
3 | B | 50S ribosomal protein L2 | polymer | 271 | 29663.2 | 1 | UniProt (P60422) Pfam (PF00181) Pfam (PF03947) In PDB | Escherichia coli | Large ribosomal subunit protein uL2 |
4 | C | 50S ribosomal protein L3 | polymer | 209 | 22277.5 | 1 | UniProt (P60438) Pfam (PF00297) In PDB | Escherichia coli | Large ribosomal subunit protein uL3 |
5 | D | 50S ribosomal protein L4 | polymer | 201 | 22121.6 | 1 | UniProt (P60723) Pfam (PF00573) In PDB | Escherichia coli | Large ribosomal subunit protein uL4 |
6 | E | 50S ribosomal protein L5 | polymer | 177 | 20073.2 | 1 | UniProt (P62399) Pfam (PF00281) Pfam (PF00673) In PDB | Escherichia coli | Large ribosomal subunit protein uL5 |
7 | F | 50S ribosomal protein L6 | polymer | 175 | 18672.4 | 1 | UniProt (P0AG55) Pfam (PF00347) In PDB | Escherichia coli | Large ribosomal subunit protein uL6 |
8 | G | 50S ribosomal protein L9 | polymer | 149 | 15789.0 | 1 | UniProt (P0A7R1) Pfam (PF03948) Pfam (PF01281) In PDB | Escherichia coli | Large ribosomal subunit protein bL9 |
9 | H | 50S ribosomal protein L10 | polymer | 130 | 13981.1 | 1 | UniProt (P0A7J3) Pfam (PF00466) In PDB | Escherichia coli | 50S ribosomal protein L8,Large ribosomal subunit protein uL10 |
10 | I | 50S ribosomal protein L11 | polymer | 135 | 14090.4 | 1 | UniProt (P0A7J7) Pfam (PF03946) Pfam (PF00298) In PDB | Escherichia coli | Large ribosomal subunit protein uL11 |
11 | J | 50S ribosomal protein L13 | polymer | 142 | 16050.6 | 1 | UniProt (P0AA10) Pfam (PF00572) In PDB | Escherichia coli | Large ribosomal subunit protein uL13 |
12 | K | 50S ribosomal protein L14 | polymer | 123 | 13565.1 | 1 | UniProt (P0ADY3) Pfam (PF00238) In PDB | Escherichia coli | Large ribosomal subunit protein uL14 |
13 | L | 50S ribosomal protein L15 | polymer | 144 | 15008.5 | 1 | UniProt (P02413) Pfam (PF00828) In PDB | Escherichia coli | Large ribosomal subunit protein uL15 |
14 | M | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (P0ADY7) Pfam (PF00252) In PDB | Escherichia coli | Large ribosomal subunit protein uL16 |
15 | N | 50S ribosomal protein L17 | polymer | 119 | 13592.8 | 1 | UniProt (P0AG44) Pfam (PF01196) In PDB | Escherichia coli | Large ribosomal subunit protein bL17 |
16 | O | 50S ribosomal protein L18 | polymer | 116 | 12663.5 | 1 | UniProt (P0C018) Pfam (PF00861) In PDB | Escherichia coli | Large ribosomal subunit protein uL18 |
17 | P | 50S ribosomal protein L19 | polymer | 114 | 13028.1 | 1 | UniProt (P0A7K6) Pfam (PF01245) In PDB | Escherichia coli | Large ribosomal subunit protein bL19 |
18 | Q | 50S ribosomal protein L20 | polymer | 117 | 13396.8 | 1 | UniProt (P0A7L3) Pfam (PF00453) In PDB | Escherichia coli | Large ribosomal subunit protein bL20 |
19 | R | 50S ribosomal protein L21 | polymer | 103 | 11586.4 | 1 | UniProt (P0AG48) Pfam (PF00829) In PDB | Escherichia coli | Large ribosomal subunit protein bL21 |
20 | S | 50S ribosomal protein L22 | polymer | 110 | 12253.4 | 1 | UniProt (P61175) Pfam (PF00237) In PDB | Escherichia coli | Large ribosomal subunit protein uL22 |
21 | T | 50S ribosomal protein L23 | polymer | 94 | 10661.6 | 1 | UniProt (P0ADZ0) Pfam (PF00276) In PDB | Escherichia coli | Large ribosomal subunit protein uL23 |
22 | U | 50S ribosomal protein L24 | polymer | 103 | 11208.1 | 1 | UniProt (P60624) Pfam (PF00467) Pfam (PF17136) In PDB | Escherichia coli | Large ribosomal subunit protein uL24 |
23 | V | 50S ribosomal protein L25 | polymer | 94 | 10713.5 | 1 | UniProt (P68919) Pfam (PF01386) In PDB | Escherichia coli | Large ribosomal subunit protein bL25 |
24 | W | 50S ribosomal protein L27 | polymer | 76 | 8275.5 | 1 | UniProt (P0A7L8) Pfam (PF01016) In PDB | Escherichia coli | Large ribosomal subunit protein bL27 |
25 | X | 50S ribosomal protein L28 | polymer | 77 | 8896.4 | 1 | UniProt (P0A7M2) Pfam (PF00830) In PDB | Escherichia coli | Large ribosomal subunit protein bL28 |
26 | Y | 50S ribosomal protein L29 | polymer | 62 | 7155.3 | 1 | UniProt (P0A7M6) Pfam (PF00831) In PDB | Escherichia coli | Large ribosomal subunit protein uL29 |
27 | Z | 50S ribosomal protein L30 | polymer | 58 | 6423.6 | 1 | UniProt (P0AG51) Pfam (PF00327) In PDB | Escherichia coli | Large ribosomal subunit protein uL30 |
28 | a | 50S ribosomal protein L31 | polymer | 66 | 7516.7 | 1 | UniProt (P0A7M9) Pfam (PF01197) In PDB | Escherichia coli | Large ribosomal subunit protein bL31-A |
29 | b | 50S ribosomal protein L32 | polymer | 56 | 6332.2 | 1 | UniProt (P0A7N4) Pfam (PF01783) In PDB | Escherichia coli | Large ribosomal subunit protein bL32 |
30 | c | 50S ribosomal protein L33 | polymer | 52 | 6057.2 | 1 | UniProt (P0A7N9) Pfam (PF00471) In PDB | Escherichia coli | Large ribosomal subunit protein bL33 |
31 | d | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (P0A7P5) Pfam (PF00468) In PDB | Escherichia coli | Large ribosomal subunit protein bL34 |
32 | e | 50S ribosomal protein L35 | polymer | 64 | 7181.8 | 1 | UniProt (P0A7Q1) Pfam (PF01632) In PDB | Escherichia coli | Large ribosomal subunit protein bL35,Ribosomal protein A |
33 | f | 50S ribosomal protein L36 | polymer | 38 | 4377.4 | 1 | UniProt (P0A7Q6) Pfam (PF00444) In PDB | Escherichia coli | Large ribosomal subunit protein bL36-A,Ribosomal protein B |
34 | g | 30S ribosomal protein S2 | polymer | 225 | 25072.9 | 1 | UniProt (P0A7V0) Pfam (PF00318) In PDB | Escherichia coli | Small ribosomal subunit protein uS2 |
35 | h | 30S ribosomal protein S3 | polymer | 208 | 23249.0 | 1 | UniProt (P0A7V3) Pfam (PF07650) Pfam (PF00189) In PDB | Escherichia coli | Small ribosomal subunit protein uS3 |
36 | i | 30S ribosomal protein S4 | polymer | 205 | 23383.0 | 1 | UniProt (P0A7V8) Pfam (PF00163) Pfam (PF01479) In PDB | Escherichia coli | Small ribosomal subunit protein uS4 |
37 | j | 30S ribosomal protein S5 | polymer | 156 | 16475.0 | 1 | UniProt (P0A7W1) Pfam (PF00333) Pfam (PF03719) In PDB | Escherichia coli | Small ribosomal subunit protein uS5 |
38 | k | 30S ribosomal protein S6 | polymer | 104 | 12126.0 | 1 | UniProt (P02358) Pfam (PF01250) In PDB | Escherichia coli | Small ribosomal subunit protein bS6 |
39 | l | 30S ribosomal protein S7 | polymer | 151 | 16861.5 | 1 | UniProt (P02359) Pfam (PF00177) In PDB | Escherichia coli | Small ribosomal subunit protein uS7 |
40 | m | 30S ribosomal protein S8 | polymer | 129 | 14015.4 | 1 | UniProt (P0A7W7) Pfam (PF00410) In PDB | Escherichia coli | Small ribosomal subunit protein uS8 |
41 | n | 30S ribosomal protein S9 | polymer | 127 | 14554.9 | 1 | UniProt (P0A7X3) Pfam (PF00380) In PDB | Escherichia coli | Small ribosomal subunit protein uS9 |
42 | o | 30S ribosomal protein S10 | polymer | 99 | 11254.0 | 1 | UniProt (P0A7R5) Pfam (PF00338) In PDB | Escherichia coli | Small ribosomal subunit protein uS10 |
43 | p | 30S ribosomal protein S11 | polymer | 117 | 12487.2 | 1 | UniProt (P0A7R9) Pfam (PF00411) In PDB | Escherichia coli | Small ribosomal subunit protein uS11 |
44 | q | 30S ribosomal protein S12 | polymer | 123 | 13683.1 | 1 | UniProt (P0A7S3) Pfam (PF00164) In PDB | Escherichia coli | Small ribosomal subunit protein uS12 |
45 | r | 30S ribosomal protein S13 | polymer | 116 | 12868.1 | 1 | UniProt (P0A7S9) Pfam (PF00416) In PDB | Escherichia coli | Small ribosomal subunit protein uS13 |
46 | s | 30S ribosomal protein S14 | polymer | 100 | 11475.4 | 1 | UniProt (P0AG59) Pfam (PF00253) In PDB | Escherichia coli | Small ribosomal subunit protein uS14 |
47 | t | 30S ribosomal protein S15 | polymer | 88 | 10159.6 | 1 | UniProt (P0ADZ4) Pfam (PF00312) In PDB | Escherichia coli | Small ribosomal subunit protein uS15 |
48 | u | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (P0A7T3) Pfam (PF00886) In PDB | Escherichia coli | Small ribosomal subunit protein bS16 |
49 | v | 30S ribosomal protein S17 | polymer | 80 | 9263.9 | 1 | UniProt (P0AG63) Pfam (PF00366) In PDB | Escherichia coli | Small ribosomal subunit protein uS17 |
50 | w | 30S ribosomal protein S18 | polymer | 66 | 7734.9 | 1 | UniProt (P0A7T7) Pfam (PF01084) In PDB | Escherichia coli | Small ribosomal subunit protein bS18 |
51 | x | 30S ribosomal protein S19 | polymer | 83 | 9421.0 | 1 | UniProt (P0A7U3) Pfam (PF00203) In PDB | Escherichia coli | Small ribosomal subunit protein uS19 |
52 | y | 30S ribosomal protein S20 | polymer | 86 | 9577.3 | 1 | UniProt (P0A7U7) Pfam (PF01649) In PDB | Escherichia coli | Small ribosomal subunit protein bS20 |
53 | z | 30S ribosomal protein S21 | polymer | 70 | 8392.8 | 1 | UniProt (P68679) Pfam (PF01165) In PDB | Escherichia coli | Small ribosomal subunit protein bS21 |
54 | 1, 3, N, P, Q... | MAGNESIUM ION | non-polymer | 24.3 | 436 | Chemie (MG) | |||
55 | a, f | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
56 | water | water | 18.0 | 2 | Chemie (HOH) |
Sequence modifications
1: 1 - 1449 (GenBank: 1370526422)
1: 1501 - 4357 (GenBank: 1063812051)
PDB | External Database | Details |
---|---|---|
G 1450 | - | linker |
G 1451 | - | linker |
U 1452 | - | linker |
C 1453 | - | linker |
A 1454 | - | linker |
A 1455 | - | linker |
C 1456 | - | linker |
A 1457 | - | linker |
G 1458 | - | linker |
C 1459 | - | linker |
C 1460 | - | linker |
G 1461 | - | linker |
U 1462 | - | linker |
U 1463 | - | linker |
U 1464 | - | linker |
G 1465 | - | linker |
A 1466 | - | linker |
G 1467 | - | linker |
C 1468 | - | linker |
U 1469 | - | linker |
A 1470 | - | linker |
A 1471 | - | linker |
C 1472 | - | linker |
C 1473 | - | linker |
G 1474 | - | linker |
G 1475 | - | linker |
U 1476 | - | linker |
A 1477 | - | linker |
C 1478 | - | linker |
U 1479 | - | linker |
A 1480 | - | linker |
A 1481 | - | linker |
U 1482 | - | linker |
G 1483 | - | linker |
A 1484 | - | linker |
A 1485 | - | linker |
C 1486 | - | linker |
C 1487 | - | linker |
G 1488 | - | linker |
U 1489 | - | linker |
G 1490 | - | linker |
A 1491 | - | linker |
G 1492 | - | linker |
G 1493 | - | linker |
C 1494 | - | linker |
U 1495 | - | linker |
U 1496 | - | linker |
A 1497 | - | linker |
A 1498 | - | linker |
C 1499 | - | linker |
C 1500 | - | linker |
PDB | External Database | Details |
---|---|---|
A 1504 | U 4109184 | conflict |
A 4358 | - | expression tag |
C 4359 | - | expression tag |
G 4360 | - | expression tag |
G 4361 | - | expression tag |
A 4362 | - | expression tag |
C 4363 | - | expression tag |
A 4364 | - | expression tag |
U 4365 | - | expression tag |
G 4366 | - | expression tag |
G 4367 | - | expression tag |
U 4368 | - | expression tag |
U 4369 | - | expression tag |
G 4370 | - | expression tag |
G 4371 | - | expression tag |
A 4372 | - | expression tag |
G 4373 | - | expression tag |
G 4374 | - | expression tag |
G 4375 | - | expression tag |
C 4376 | - | expression tag |
G 4377 | - | expression tag |
C 4378 | - | expression tag |
U 4379 | - | expression tag |
U 4380 | - | expression tag |
A 4381 | - | expression tag |
C 4382 | - | expression tag |
C 4383 | - | expression tag |
A 4384 | - | expression tag |
C 4385 | - | expression tag |
U 4386 | - | expression tag |
U 4387 | - | expression tag |
U 4388 | - | expression tag |
G 4389 | - | expression tag |
U 4390 | - | expression tag |
G 4391 | - | expression tag |
A 4392 | - | expression tag |
U 4393 | - | expression tag |
U 4394 | - | expression tag |
C 4395 | - | expression tag |
A 4396 | - | expression tag |
U 4397 | - | expression tag |
G 4398 | - | expression tag |
A 4399 | - | expression tag |
C 4400 | - | expression tag |
U 4401 | - | expression tag |
G 4402 | - | expression tag |
G 4403 | - | expression tag |
G 4404 | - | expression tag |
G 4405 | - | expression tag |
U 4406 | - | expression tag |
G 4407 | - | expression tag |
A 4408 | - | expression tag |
A 4409 | - | expression tag |
G 4410 | - | expression tag |
U 4411 | - | expression tag |
C 4412 | - | expression tag |
G 4413 | - | expression tag |
Ur3 4414 | - | expression tag |
A 4415 | - | expression tag |
A 4416 | - | expression tag |
C 4417 | - | expression tag |
A 4418 | - | expression tag |
A 4419 | - | expression tag |
G 4420 | - | expression tag |
G 4421 | - | expression tag |
U 4422 | - | expression tag |
A 4423 | - | expression tag |
A 4424 | - | expression tag |
C 4425 | - | expression tag |
C 4426 | - | expression tag |
G 4427 | - | expression tag |
U 4428 | - | expression tag |
A 4429 | - | expression tag |
G 4430 | - | expression tag |
G 4431 | - | expression tag |
2mg 4432 | - | expression tag |
G 4433 | - | expression tag |
Ma6 4434 | - | expression tag |
Ma6 4435 | - | expression tag |
C 4436 | - | expression tag |
C 4437 | - | expression tag |
U 4438 | - | expression tag |
G 4439 | - | expression tag |
C 4440 | - | expression tag |
G 4441 | - | expression tag |
G 4442 | - | expression tag |
U 4443 | - | expression tag |
U 4444 | - | expression tag |
G 4445 | - | expression tag |
G 4446 | - | expression tag |
A 4447 | - | expression tag |
U 4448 | - | expression tag |
C 4449 | - | expression tag |
A 4450 | - | expression tag |
C 4451 | - | expression tag |
C 4452 | - | expression tag |
U 4453 | - | expression tag |
C 4454 | - | expression tag |
C 4455 | - | expression tag |
U 4456 | - | expression tag |
U 4457 | - | expression tag |
A 4458 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 53 |
Total formula weight | 2149060.2 | |
Non-Polymers* | Number of molecules | 438 |
Total formula weight | 10727.8 | |
All* | Total formula weight | 2159788.0 |