Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6HRM

E. coli 70S d2d8 stapled ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(1)
stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNApolymer44581445685.01GenBank (1370526422)
GenBank (1063812051)
Escherichia coli
2B
(3)
5S ribosomal RNApolymer12038790.11GenBank (1403738069)Escherichia coli
3C
(B)
50S ribosomal protein L2polymer27129663.21UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
Escherichia coliLarge ribosomal subunit protein uL2
4D
(C)
50S ribosomal protein L3polymer20922277.51UniProt (P60438)
Pfam (PF00297)
Escherichia coliLarge ribosomal subunit protein uL3
5E
(D)
50S ribosomal protein L4polymer20122121.61UniProt (P60723)
Pfam (PF00573)
Escherichia coliLarge ribosomal subunit protein uL4
6F
(E)
50S ribosomal protein L5polymer17720073.21UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
Escherichia coliLarge ribosomal subunit protein uL5
7G
(F)
50S ribosomal protein L6polymer17518672.41UniProt (P0AG55)
Pfam (PF00347)
Escherichia coliLarge ribosomal subunit protein uL6
8H
(G)
50S ribosomal protein L9polymer14915789.01UniProt (P0A7R1)
Pfam (PF03948)
Pfam (PF01281)
Escherichia coliLarge ribosomal subunit protein bL9
9I
(H)
50S ribosomal protein L10polymer13013981.11UniProt (P0A7J3)
Pfam (PF00466)
Escherichia coli50S ribosomal protein L8,Large ribosomal subunit protein uL10
10J
(I)
50S ribosomal protein L11polymer13514090.41UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)
Escherichia coliLarge ribosomal subunit protein uL11
11K
(J)
50S ribosomal protein L13polymer14216050.61UniProt (P0AA10)
Pfam (PF00572)
Escherichia coliLarge ribosomal subunit protein uL13
12L
(K)
50S ribosomal protein L14polymer12313565.11UniProt (P0ADY3)
Pfam (PF00238)
Escherichia coliLarge ribosomal subunit protein uL14
13M
(L)
50S ribosomal protein L15polymer14415008.51UniProt (P02413)
Pfam (PF00828)
Escherichia coliLarge ribosomal subunit protein uL15
14N
(M)
50S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)
Escherichia coliLarge ribosomal subunit protein uL16
15O
(N)
50S ribosomal protein L17polymer11913592.81UniProt (P0AG44)
Pfam (PF01196)
Escherichia coliLarge ribosomal subunit protein bL17
16P
(O)
50S ribosomal protein L18polymer11612663.51UniProt (P0C018)
Pfam (PF00861)
Escherichia coliLarge ribosomal subunit protein uL18
17Q
(P)
50S ribosomal protein L19polymer11413028.11UniProt (P0A7K6)
Pfam (PF01245)
Escherichia coliLarge ribosomal subunit protein bL19
18R
(Q)
50S ribosomal protein L20polymer11713396.81UniProt (P0A7L3)
Pfam (PF00453)
Escherichia coliLarge ribosomal subunit protein bL20
19S
(R)
50S ribosomal protein L21polymer10311586.41UniProt (P0AG48)
Pfam (PF00829)
Escherichia coliLarge ribosomal subunit protein bL21
20T
(S)
50S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
Escherichia coliLarge ribosomal subunit protein uL22
21U
(T)
50S ribosomal protein L23polymer9410661.61UniProt (P0ADZ0)
Pfam (PF00276)
Escherichia coliLarge ribosomal subunit protein uL23
22V
(U)
50S ribosomal protein L24polymer10311208.11UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
Escherichia coliLarge ribosomal subunit protein uL24
23W
(V)
50S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)
Escherichia coliLarge ribosomal subunit protein bL25
24X
(W)
50S ribosomal protein L27polymer768275.51UniProt (P0A7L8)
Pfam (PF01016)
Escherichia coliLarge ribosomal subunit protein bL27
25Y
(X)
50S ribosomal protein L28polymer778896.41UniProt (P0A7M2)
Pfam (PF00830)
Escherichia coliLarge ribosomal subunit protein bL28
26Z
(Y)
50S ribosomal protein L29polymer627155.31UniProt (P0A7M6)
Pfam (PF00831)
Escherichia coliLarge ribosomal subunit protein uL29
27AA
(Z)
50S ribosomal protein L30polymer586423.61UniProt (P0AG51)
Pfam (PF00327)
Escherichia coliLarge ribosomal subunit protein uL30
28BA
(a)
50S ribosomal protein L31polymer667516.71UniProt (P0A7M9)
Pfam (PF01197)
Escherichia coliLarge ribosomal subunit protein bL31-A
29CA
(b)
50S ribosomal protein L32polymer566332.21UniProt (P0A7N4)
Pfam (PF01783)
Escherichia coliLarge ribosomal subunit protein bL32
30DA
(c)
50S ribosomal protein L33polymer526057.21UniProt (P0A7N9)
Pfam (PF00471)
Escherichia coliLarge ribosomal subunit protein bL33
31EA
(d)
50S ribosomal protein L34polymer465397.51UniProt (P0A7P5)
Pfam (PF00468)
Escherichia coliLarge ribosomal subunit protein bL34
32FA
(e)
50S ribosomal protein L35polymer647181.81UniProt (P0A7Q1)
Pfam (PF01632)
Escherichia coliLarge ribosomal subunit protein bL35,Ribosomal protein A
33GA
(f)
50S ribosomal protein L36polymer384377.41UniProt (P0A7Q6)
Pfam (PF00444)
Escherichia coliLarge ribosomal subunit protein bL36-A,Ribosomal protein B
34HA
(g)
30S ribosomal protein S2polymer22525072.91UniProt (P0A7V0)
Pfam (PF00318)
Escherichia coliSmall ribosomal subunit protein uS2
35IA
(h)
30S ribosomal protein S3polymer20823249.01UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)
Escherichia coliSmall ribosomal subunit protein uS3
36JA
(i)
30S ribosomal protein S4polymer20523383.01UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
Escherichia coliSmall ribosomal subunit protein uS4
37KA
(j)
30S ribosomal protein S5polymer15616475.01UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
Escherichia coliSmall ribosomal subunit protein uS5
38LA
(k)
30S ribosomal protein S6polymer10412126.01UniProt (P02358)
Pfam (PF01250)
Escherichia coliSmall ribosomal subunit protein bS6
39MA
(l)
30S ribosomal protein S7polymer15116861.51UniProt (P02359)
Pfam (PF00177)
Escherichia coliSmall ribosomal subunit protein uS7
40NA
(m)
30S ribosomal protein S8polymer12914015.41UniProt (P0A7W7)
Pfam (PF00410)
Escherichia coliSmall ribosomal subunit protein uS8
41OA
(n)
30S ribosomal protein S9polymer12714554.91UniProt (P0A7X3)
Pfam (PF00380)
Escherichia coliSmall ribosomal subunit protein uS9
42PA
(o)
30S ribosomal protein S10polymer9911254.01UniProt (P0A7R5)
Pfam (PF00338)
Escherichia coliSmall ribosomal subunit protein uS10
43QA
(p)
30S ribosomal protein S11polymer11712487.21UniProt (P0A7R9)
Pfam (PF00411)
Escherichia coliSmall ribosomal subunit protein uS11
44RA
(q)
30S ribosomal protein S12polymer12313683.11UniProt (P0A7S3)
Pfam (PF00164)
Escherichia coliSmall ribosomal subunit protein uS12
45SA
(r)
30S ribosomal protein S13polymer11612868.11UniProt (P0A7S9)
Pfam (PF00416)
Escherichia coliSmall ribosomal subunit protein uS13
46TA
(s)
30S ribosomal protein S14polymer10011475.41UniProt (P0AG59)
Pfam (PF00253)
Escherichia coliSmall ribosomal subunit protein uS14
47UA
(t)
30S ribosomal protein S15polymer8810159.61UniProt (P0ADZ4)
Pfam (PF00312)
Escherichia coliSmall ribosomal subunit protein uS15
48VA
(u)
30S ribosomal protein S16polymer829207.61UniProt (P0A7T3)
Pfam (PF00886)
Escherichia coliSmall ribosomal subunit protein bS16
49WA
(v)
30S ribosomal protein S17polymer809263.91UniProt (P0AG63)
Pfam (PF00366)
Escherichia coliSmall ribosomal subunit protein uS17
50XA
(w)
30S ribosomal protein S18polymer667734.91UniProt (P0A7T7)
Pfam (PF01084)
Escherichia coliSmall ribosomal subunit protein bS18
51YA
(x)
30S ribosomal protein S19polymer839421.01UniProt (P0A7U3)
Pfam (PF00203)
Escherichia coliSmall ribosomal subunit protein uS19
52ZA
(y)
30S ribosomal protein S20polymer869577.31UniProt (P0A7U7)
Pfam (PF01649)
Escherichia coliSmall ribosomal subunit protein bS20
53AB
(z)
30S ribosomal protein S21polymer708392.81UniProt (P68679)
Pfam (PF01165)
Escherichia coliSmall ribosomal subunit protein bS21
54AC, AD, AE, AF, AG...
(1, 3, N, P, Q...)
MAGNESIUM IONnon-polymer24.3436Chemie (MG)
55TR, VR
(a, f)
ZINC IONnon-polymer65.42Chemie (ZN)
56XR
(B)
waterwater18.02Chemie (HOH)
Sequence modifications
1: 1 - 1449 (GenBank: 1370526422)
PDBExternal DatabaseDetails
G 1450-linker
G 1451-linker
U 1452-linker
C 1453-linker
A 1454-linker
A 1455-linker
C 1456-linker
A 1457-linker
G 1458-linker
C 1459-linker
C 1460-linker
G 1461-linker
U 1462-linker
U 1463-linker
U 1464-linker
G 1465-linker
A 1466-linker
G 1467-linker
C 1468-linker
U 1469-linker
A 1470-linker
A 1471-linker
C 1472-linker
C 1473-linker
G 1474-linker
G 1475-linker
U 1476-linker
A 1477-linker
C 1478-linker
U 1479-linker
A 1480-linker
A 1481-linker
U 1482-linker
G 1483-linker
A 1484-linker
A 1485-linker
C 1486-linker
C 1487-linker
G 1488-linker
U 1489-linker
G 1490-linker
A 1491-linker
G 1492-linker
G 1493-linker
C 1494-linker
U 1495-linker
U 1496-linker
A 1497-linker
A 1498-linker
C 1499-linker
C 1500-linker
1: 1501 - 4357 (GenBank: 1063812051)
PDBExternal DatabaseDetails
A 1504U 4109184conflict
A 4358-expression tag
C 4359-expression tag
G 4360-expression tag
G 4361-expression tag
A 4362-expression tag
C 4363-expression tag
A 4364-expression tag
U 4365-expression tag
G 4366-expression tag
G 4367-expression tag
U 4368-expression tag
U 4369-expression tag
G 4370-expression tag
G 4371-expression tag
A 4372-expression tag
G 4373-expression tag
G 4374-expression tag
G 4375-expression tag
C 4376-expression tag
G 4377-expression tag
C 4378-expression tag
U 4379-expression tag
U 4380-expression tag
A 4381-expression tag
C 4382-expression tag
C 4383-expression tag
A 4384-expression tag
C 4385-expression tag
U 4386-expression tag
U 4387-expression tag
U 4388-expression tag
G 4389-expression tag
U 4390-expression tag
G 4391-expression tag
A 4392-expression tag
U 4393-expression tag
U 4394-expression tag
C 4395-expression tag
A 4396-expression tag
U 4397-expression tag
G 4398-expression tag
A 4399-expression tag
C 4400-expression tag
U 4401-expression tag
G 4402-expression tag
G 4403-expression tag
G 4404-expression tag
G 4405-expression tag
U 4406-expression tag
G 4407-expression tag
A 4408-expression tag
A 4409-expression tag
G 4410-expression tag
U 4411-expression tag
C 4412-expression tag
G 4413-expression tag
Ur3 4414-expression tag
A 4415-expression tag
A 4416-expression tag
C 4417-expression tag
A 4418-expression tag
A 4419-expression tag
G 4420-expression tag
G 4421-expression tag
U 4422-expression tag
A 4423-expression tag
A 4424-expression tag
C 4425-expression tag
C 4426-expression tag
G 4427-expression tag
U 4428-expression tag
A 4429-expression tag
G 4430-expression tag
G 4431-expression tag
2mg 4432-expression tag
G 4433-expression tag
Ma6 4434-expression tag
Ma6 4435-expression tag
C 4436-expression tag
C 4437-expression tag
U 4438-expression tag
G 4439-expression tag
C 4440-expression tag
G 4441-expression tag
G 4442-expression tag
U 4443-expression tag
U 4444-expression tag
G 4445-expression tag
G 4446-expression tag
A 4447-expression tag
U 4448-expression tag
C 4449-expression tag
A 4450-expression tag
C 4451-expression tag
C 4452-expression tag
U 4453-expression tag
C 4454-expression tag
C 4455-expression tag
U 4456-expression tag
U 4457-expression tag
A 4458-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains53
Total formula weight2149060.2
Non-Polymers*Number of molecules438
Total formula weight10727.8
All*Total formula weight2159788.0
*Water molecules are not included.

237423

PDB entries from 2025-06-11

PDB statisticsPDBj update infoContact PDBjnumon