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6HCM

Structure of the rabbit collided di-ribosome (stalled monosome)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A118S ribosomal RNApolymer1869602778.91Oryctolagus cuniculus (rabbit)
2B1uS2polymer29532958.01Oryctolagus cuniculus (rabbit)
3C140S ribosomal protein S3apolymer26430002.11UniProt (G1SS70)
Pfam (PF01015)
In PDB
Oryctolagus cuniculus (rabbit)
4D1uS5polymer29331327.41Oryctolagus cuniculus (rabbit)
5E1uS3polymer24326715.31UniProt (G1TNM3)
Pfam (PF07650)
Pfam (PF00189)
In PDB
Oryctolagus cuniculus (rabbit)
6F1eS4polymer26329654.91Oryctolagus cuniculus (rabbit)
7G1Ribosomal protein S5polymer20422913.51UniProt (G1TFM5)
Pfam (PF00177)
In PDB
Oryctolagus cuniculus (rabbit)
8H140S ribosomal protein S6polymer24928751.91UniProt (G1TM55)
Pfam (PF01092)
In PDB
Oryctolagus cuniculus (rabbit)
9I140S ribosomal protein S7polymer19422168.91UniProt (G1SVB0)
In PDB
Oryctolagus cuniculus (rabbit)
10J1eS8polymer20824263.41Oryctolagus cuniculus (rabbit)
11K1Ribosomal protein S9 (Predicted)polymer19422641.61UniProt (B7NZS8)
Pfam (PF00163)
Pfam (PF01479)
In PDB
Oryctolagus cuniculus (rabbit)
12L1eS10polymer16518933.81UniProt (G1TPV3)
Pfam (PF03501)
In PDB
Oryctolagus cuniculus (rabbit)
13M1Ribosomal protein S11polymer15818468.81UniProt (G1TRM4)
Pfam (PF16205)
Pfam (PF00366)
In PDB
Oryctolagus cuniculus (rabbit)
14N140S ribosomal protein S12polymer13214539.01UniProt (G1SFR8)
Pfam (PF01248)
In PDB
Oryctolagus cuniculus (rabbit)
15O1uS15polymer15117259.41UniProt (G1SP51)
Pfam (PF08069)
Pfam (PF00312)
In PDB
Oryctolagus cuniculus (rabbit)
16P1uS11polymer16818134.01Oryctolagus cuniculus (rabbit)
17Q1uS19polymer14517049.21UniProt (G1U0Q2)
Pfam (PF00203)
In PDB
Oryctolagus cuniculus (rabbit)
18R1Ribosomal protein S16polymer14616477.41UniProt (G1SGX4)
Pfam (PF00380)
In PDB
Oryctolagus cuniculus (rabbit)
19S1eS17polymer13515552.11UniProt (G1TU13)
Pfam (PF00833)
In PDB
Oryctolagus cuniculus (rabbit)
20T1uS13polymer15217759.81UniProt (G1TPG3)
Pfam (PF00416)
In PDB
Oryctolagus cuniculus (rabbit)
21U1eS19polymer14516106.61Oryctolagus cuniculus (rabbit)
22V1uS10polymer11913398.81UniProt (G1SIZ2)
Pfam (PF00338)
In PDB
Oryctolagus cuniculus (rabbit)
23W1eS21polymer839124.41Oryctolagus cuniculus (rabbit)
24X1Ribosomal protein S15apolymer13014865.61UniProt (G1TG89)
Pfam (PF00410)
In PDB
Oryctolagus cuniculus (rabbit)
25Y1uS12polymer14315844.71Oryctolagus cuniculus (rabbit)
26Z1eS24polymer13015107.91Oryctolagus cuniculus (rabbit)
27a1eS25polymer12513776.21UniProt (G1TDB3)
Pfam (PF03297)
In PDB
Oryctolagus cuniculus (rabbit)
28b1eS26polymer11513047.51Oryctolagus cuniculus (rabbit)
29c140S ribosomal protein S27polymer849480.21UniProt (G1TZ76)
Pfam (PF01667)
In PDB
Oryctolagus cuniculus (rabbit)
30d1Ribosomal protein S28polymer697855.11UniProt (G1TIB4)
Pfam (PF01200)
In PDB
Oryctolagus cuniculus (rabbit)
31e1uS14polymer566690.81UniProt (G1U7M4)
Pfam (PF00253)
In PDB
Oryctolagus cuniculus (rabbit)
32f140S ribosomal protein S30polymer13314498.91UniProt (G1T8A2)
Pfam (PF00240)
Pfam (PF04758)
In PDB
Oryctolagus cuniculus (rabbit)
33g1Ribosomal protein S27apolymer15618004.01UniProt (G1SK22)
Pfam (PF00240)
Pfam (PF01599)
In PDB
Oryctolagus cuniculus (rabbit)
34h1RACK1polymer31735115.71UniProt (G1SJB4)
Pfam (PF00400)
In PDB
Oryctolagus cuniculus (rabbit)
35j1eRF1(AAQ)polymer43949264.91Oryctolagus cuniculus (rabbit)
36k1ATP binding cassette subfamily E member 1polymer59967405.21UniProt (G1SG72)
Pfam (PF04068)
Pfam (PF00037)
Pfam (PF00005)
In PDB
Oryctolagus cuniculus (rabbit)
375228S ribosomal RNApolymer36341177577.01Oryctolagus cuniculus (rabbit)
38725S ribosomal RNApolymer12038691.91Oryctolagus cuniculus (rabbit)
39825.8S ribosomal RNApolymer15650143.61Oryctolagus cuniculus (rabbit)
40A3Ribosomal protein L8polymer25728088.91UniProt (G1TT27)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Oryctolagus cuniculus (rabbit)
41B3uL3polymer40346108.01UniProt (G1TL06)
Pfam (PF00297)
In PDB
Oryctolagus cuniculus (rabbit)
42C3uL4polymer42547727.61Oryctolagus cuniculus (rabbit)
43E360S ribosomal protein L6polymer29133028.31UniProt (G1SKF7)
Pfam (PF03868)
Pfam (PF01159)
In PDB
Oryctolagus cuniculus (rabbit)
44F3uL30polymer24729201.81UniProt (G1TUB1)
Pfam (PF00327)
Pfam (PF08079)
In PDB
Oryctolagus cuniculus (rabbit)
45H3uL6polymer19221871.41UniProt (G1TX33)
Pfam (PF00347)
UniProt (by SIFTS) (G1SWI6)
In PDB
Oryctolagus cuniculus (rabbit)
46L3eL13polymer21124331.71Oryctolagus cuniculus (rabbit)
47M3Ribosomal protein L14polymer21823870.51UniProt (G1SZ12)
Pfam (PF01929)
In PDB
Oryctolagus cuniculus (rabbit)
48N3Ribosomal protein L15polymer20424207.31UniProt (G1T0C1)
Pfam (PF00827)
In PDB
Oryctolagus cuniculus (rabbit)
49O3uL13polymer20323533.31Oryctolagus cuniculus (rabbit)
50P3uL22polymer18421444.21UniProt (G1TVT6)
Pfam (PF00237)
UniProt (by SIFTS) (G1SCJ6)
In PDB
Oryctolagus cuniculus (rabbit)
51Q3eL18polymer18821699.71Oryctolagus cuniculus (rabbit)
52R3eL19polymer19623535.31Oryctolagus cuniculus (rabbit)
53S3eL20polymer17620827.61Oryctolagus cuniculus (rabbit)
54T3eL21polymer16018610.01UniProt (G1SHQ2)
Pfam (PF01157)
In PDB
Oryctolagus cuniculus (rabbit)
55U3eL22polymer12814813.01Oryctolagus cuniculus (rabbit)
56V3Ribosomal protein L23polymer14014892.51UniProt (G1T6D1)
Pfam (PF00238)
In PDB
Oryctolagus cuniculus (rabbit)
57W3eL24polymer15717825.11UniProt (G1SE28)
Pfam (PF01246)
In PDB
Oryctolagus cuniculus (rabbit)
58X3uL23polymer15617768.21UniProt (G1SE76)
Pfam (PF03939)
Pfam (PF00276)
In PDB
Oryctolagus cuniculus (rabbit)
59Y3Ribosomal protein L26polymer14517303.41UniProt (G1SQH0)
Pfam (PF16906)
Pfam (PF00467)
In PDB
Oryctolagus cuniculus (rabbit)
60Z3eL27polymer13615835.81Oryctolagus cuniculus (rabbit)
61a3uL15polymer14816620.61Oryctolagus cuniculus (rabbit)
62b3eL29polymer24526708.71Oryctolagus cuniculus (rabbit)
63c3eL30polymer11512807.11UniProt (G1TDL2)
Pfam (PF01248)
In PDB
Oryctolagus cuniculus (rabbit)
64d3eL31polymer12514494.91UniProt (G1SHG0)
Pfam (PF01198)
In PDB
Oryctolagus cuniculus (rabbit)
65e3eL32polymer13415767.71UniProt (G1TUN8)
Pfam (PF01655)
In PDB
Oryctolagus cuniculus (rabbit)
66f3eL33polymer11012580.81UniProt (G1SF08)
Pfam (PF01247)
In PDB
Oryctolagus cuniculus (rabbit)
67g3eL34polymer11713326.11Oryctolagus cuniculus (rabbit)
68h3uL29polymer12314566.61UniProt (G1SIT5)
Pfam (PF00831)
In PDB
Oryctolagus cuniculus (rabbit)
69i360S ribosomal protein L36polymer10512263.81UniProt (G1TTQ5)
Pfam (PF01158)
In PDB
Oryctolagus cuniculus (rabbit)
70j3Ribosomal protein L37polymer9711111.01UniProt (U3KPD5)
Pfam (PF01907)
In PDB
Oryctolagus cuniculus (rabbit)
71k3eL38polymer708238.91Oryctolagus cuniculus (rabbit)
72l3eL39polymer516455.81UniProt (G1TTN1)
Pfam (PF00832)
In PDB
Oryctolagus cuniculus (rabbit)
73m3eL40polymer10211699.81Oryctolagus cuniculus (rabbit)
74n3eL41polymer253473.51Oryctolagus cuniculus (rabbit)
75o3eL42polymer10612477.01Oryctolagus cuniculus (rabbit)
76p3eL43polymer9210299.41UniProt (G1SY53)
Pfam (PF01780)
In PDB
Oryctolagus cuniculus (rabbit)
77r3eL28polymer13715783.61UniProt (G1U7L1)
Pfam (PF01778)
In PDB
Oryctolagus cuniculus (rabbit)
78s3uL10polymer31834380.51Oryctolagus cuniculus (rabbit)
79t3Ribosomal protein L12polymer16517847.61UniProt (G1SMR7)
Pfam (PF03946)
Pfam (PF00298)
In PDB
Oryctolagus cuniculus (rabbit)
8023P-site tRNApolymer7624436.61Oryctolagus cuniculus (rabbit)
81w3mRNApolymer237387.51Oryctolagus cuniculus (rabbit)
82J3Ribosomal protein L11polymer17820288.51UniProt (G1TUB8)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Oryctolagus cuniculus (rabbit)
83G3eL8polymer31936221.51Oryctolagus cuniculus (rabbit)
84D360S ribosomal protein L5polymer29734481.81UniProt (G1SYJ6)
UniProt (by SIFTS) (P19949)
In PDB
Oryctolagus cuniculus (rabbit)
85I360S ribosomal protein L10polymer21424643.11UniProt (B7NZQ2)
Pfam (PF00252)
In PDB
Oryctolagus cuniculus (rabbit)Ribosomal protein L10 (Predicted)
861nascent chainpolymer221581.71Oryctolagus cuniculus (rabbit)
87u3Ribosomal proteinpolymer21724879.41UniProt (G1SKZ8)
Pfam (PF00687)
In PDB
Oryctolagus cuniculus (rabbit)
88A1, 52, g3, w3, G1...MAGNESIUM IONnon-polymer24.3300Chemie (MG)
89g3, j3, m3, o3, p3...ZINC IONnon-polymer65.48Chemie (ZN)
90k1IRON/SULFUR CLUSTERnon-polymer351.62Chemie (SF4)
91waterwater18.04Chemie (HOH)
Sequence modifications
B3: 2 - 403 (UniProt: G1TL06)
PDBExternal DatabaseDetails
Met 1-initiating methionine
F3: 1 - 247 (UniProt: G1TUB1)
PDBExternal DatabaseDetails
Arg 61Gly 61conflict
Arg 93Gly 93conflict
Met 131Val 131conflict
Ile 153Val 153conflict
D3: 2 - 297 (UniProt: G1SYJ6)
PDBExternal DatabaseDetails
Met 1-initiating methionine
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains87
Total formula weight3565695.4
Non-Polymers*Number of molecules310
Total formula weight8518.1
All*Total formula weight3574213.5
*Water molecules are not included.

225158

PDB entries from 2024-09-18

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