Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6H58

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
10, 0050S ribosomal protein L32polymer566332.22UniProt (P0A7N4)
Pfam (PF01783)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein bL32
21, 1150S ribosomal protein L33polymer505814.82UniProt (P0A7N9)
Pfam (PF00471)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein bL33
32, 2250S ribosomal protein L34polymer465397.52UniProt (P0A7P5)
Pfam (PF00468)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein bL34
43, 3350S ribosomal protein L35polymer647181.82UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein bL35,Ribosomal protein A
54, 4450S ribosomal protein L36polymer384377.42UniProt (P0A7Q6)
Pfam (PF00444)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein bL36-A,Ribosomal protein B
66, 6650S ribosomal protein L31polymer667516.72UniProt (P0A7M9)
Pfam (PF01197)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein bL31-A
7A, AA23S ribosomal RNApolymer2903941305.32GenBank (1036415628)Escherichia coli BW25113
8B, BB5S ribosomal RNApolymer12038813.12GenBank (1393501787)Escherichia coli BW25113
9C, CC50S ribosomal protein L2polymer27129663.22UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein uL2
10D, DD50S ribosomal protein L3polymer20922277.52UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein uL3
11E, EE50S ribosomal protein L4polymer20122121.62UniProt (P60723)
Pfam (PF00573)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein uL4
12F, FF50S ribosomal protein L5polymer17720073.22UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein uL5
13G, GG50S ribosomal protein L6polymer17618801.62UniProt (P0AG55)
Pfam (PF00347)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein uL6
14H, HH50S ribosomal protein L9polymer14915789.02UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein bL9
15J, JJ50S ribosomal protein L13polymer14216050.62UniProt (P0AA10)
Pfam (PF00572)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein uL13
16K, KK50S ribosomal protein L14polymer12213451.92UniProt (P0ADY3)
Pfam (PF00238)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein uL14
17L, LL50S ribosomal protein L15polymer14314877.32UniProt (P02413)
Pfam (PF00828)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein uL15
18M, MM50S ribosomal protein L16polymer13615312.32UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein uL16
19N, NN50S ribosomal protein L17polymer12013721.92UniProt (P0AG44)
Pfam (PF01196)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein bL17
20O, OO50S ribosomal protein L18polymer11612663.52UniProt (P0C018)
Pfam (PF00861)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein uL18
21P, PP50S ribosomal protein L19polymer11413028.12UniProt (P0A7K6)
Pfam (PF01245)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein bL19
22Q, QQ50S ribosomal protein L20polymer11713396.82UniProt (P0A7L3)
Pfam (PF00453)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein bL20
23R, RR50S ribosomal protein L21polymer10311586.42UniProt (P0AG48)
Pfam (PF00829)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein bL21
24S, SS50S ribosomal protein L22polymer11012253.42UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein uL22
25T, TT50S ribosomal protein L23polymer9310546.52UniProt (P0ADZ0)
Pfam (PF00276)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein uL23
26U, UU50S ribosomal protein L24polymer10211078.92UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein uL24
27V, VV50S ribosomal protein L25polymer9410713.52UniProt (P68919)
Pfam (PF01386)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein bL25
28W, WW50S ribosomal protein L27polymer758174.42UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein bL27
29X, XX50S ribosomal protein L28polymer778896.42UniProt (P0A7M2)
Pfam (PF00830)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein bL28
30Y, YY50S ribosomal protein L29polymer637286.52UniProt (P0A7M6)
Pfam (PF00831)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein uL29
31Z, ZZ50S ribosomal protein L30polymer586423.62UniProt (P0AG51)
Pfam (PF00327)
In PDB		Escherichia coli BW25113Large ribosomal subunit protein uL30
32a, aa16S ribosomal RNApolymer1539498725.42GenBank (1359176725)Escherichia coli BW25113
33b, bb30S ribosomal protein S2polymer22625096.82UniProt (P0A7V0)
Pfam (PF00318)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein uS2
34c, cc30S ribosomal protein S3polymer20623078.82UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein uS3
35d, dd30S ribosomal protein S4polymer20523383.02UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein uS4
36e, ee30S ribosomal protein S5polymer15716532.12UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein uS5
37f, ff30S ribosomal protein S6polymer10011669.42UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein bS6
38g, gg30S ribosomal protein S7polymer16118048.92UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein uS7
39h, hh30S ribosomal protein S8polymer12914015.42UniProt (P0A7W7)
Pfam (PF00410)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein uS8
40i, ii30S ribosomal protein S9polymer12714554.92UniProt (P0A7X3)
Pfam (PF00380)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein uS9
41j, jj30S ribosomal protein S10polymer9811197.02UniProt (P0A7R5)
Pfam (PF00338)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein uS10
42k, kk30S ribosomal protein S11polymer11612388.12UniProt (P0A7R9)
Pfam (PF00411)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein uS11
43l, ll30S ribosomal protein S12polymer12313637.02UniProt (P0A7S3)
Pfam (PF00164)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein uS12
44m, mm30S ribosomal protein S13polymer11412625.82UniProt (P0A7S9)
Pfam (PF00416)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein uS13
45n, nn30S ribosomal protein S14polymer10111546.42UniProt (P0AG59)
Pfam (PF00253)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein uS14
46o, oo30S ribosomal protein S15polymer8810159.62UniProt (P0ADZ4)
Pfam (PF00312)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein uS15
47p, pp30S ribosomal protein S16polymer829207.62UniProt (P0A7T3)
Pfam (PF00886)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein bS16
48q, qq30S ribosomal protein S17polymer809263.92UniProt (P0AG63)
Pfam (PF00366)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein uS17
49r, rr30S ribosomal protein S18polymer657606.82UniProt (P0A7T7)
Pfam (PF01084)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein bS18
50s, ss30S ribosomal protein S19polymer799057.62UniProt (P0A7U3)
Pfam (PF00203)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein uS19
51t, tt30S ribosomal protein S20polymer859506.22UniProt (P0A7U7)
Pfam (PF01649)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein bS20
52u, uu30S ribosomal protein S21polymer657763.12UniProt (P68679)
Pfam (PF01165)
In PDB		Escherichia coli BW25113Small ribosomal subunit protein bS21
53v, vvRibosome modulation factorpolymer556520.52UniProt (P0AFW2)
Pfam (PF04957)
In PDB		Escherichia coli BW25113RMF,Hibernation factor RMF,Protein E
54x, xxRibosome hibernation promoting factorpolymer9510768.22UniProt (P0AFX0)
Pfam (PF02482)
In PDB		Escherichia coli BW25113HPF,Hibernation factor HPF
55y, yy30S ribosomal protein S1polymer55761238.92UniProt (P0AG67)
Pfam (PF00575)
In PDB		Escherichia coli BW25113Bacteriophage Q beta RNA-directed RNA polymerase subunit I,Small ribosomal subunit protein bS1
56w, wwtRNA Mixturepolymer7724771.82GenBank (1063812051)Escherichia coli BW25113
Sequence modifications
A, AA: 1 - 2903 (GenBank: 1036415628)
PDBExternal DatabaseDetails
C 747U 1155325conflict
G 1847A 1156425conflict
A 2069G 1156647conflict
B, BB: 1 - 120 (GenBank: 1393501787)
PDBExternal DatabaseDetails
A 120U 3006612conflict
b, bb: 8 - 225 (UniProt: P0A7V0)
PDBExternal DatabaseDetails
Gln 226-expression tag
Asp 227-expression tag
Leu 228-expression tag
Ala 229-expression tag
Ser 230-expression tag
Gln 231-expression tag
Ala 232-expression tag
Glu 233-expression tag
g, gg: 1 - 161 (UniProt: P02359)
PDBExternal DatabaseDetails
Ala 154Arg 155conflict
Ala 161Phe 162conflict
n, nn: 1 - 101 (UniProt: P0AG59)
PDBExternal DatabaseDetails
Ala 35-insertion
x, xx: 1 - 95 (UniProt: P0AFX0)
PDBExternal DatabaseDetails
Asp 57Asn 57conflict
Leu 61Ile 61conflict
w, ww: 1 - 76 (GenBank: 1063812051)
PDBExternal DatabaseDetails
U 29G 3258805conflict
A 41C 3258793conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains112
Total formula weight4434579.6
All*Total formula weight4434579.6
*Water molecules are not included.

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon