6GZZ

T. thermophilus hibernating 100S ribosome (amc)

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, FA (C1, C2)	50S ribosomal protein L2	polymer	272	29985.8	2	UniProt (P60405) Pfam (PF00181) Pfam (PF03947)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
2	B, GA (D1, D2)	50S ribosomal protein L3	polymer	205	22321.0	2	UniProt (Q5SHN8) Pfam (PF00297)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
3	C, HA (E1, E2)	50S ribosomal protein L4	polymer	208	23071.7	2	UniProt (Q5SHN9) Pfam (PF00573)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	L1e
4	D, IA (F1, F2)	50S ribosomal protein L5	polymer	181	20930.4	2	UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
5	E, JA (G1, G2)	50S ribosomal protein L6	polymer	170	18567.6	2	UniProt (P0DOY8) Pfam (PF00347)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
6	F, KA (H1, H2)	50S ribosomal protein L9	polymer	50	5454.4	2	UniProt (Q5SLQ1) Pfam (PF01281)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
7	G, LA (I1, I2)	50S ribosomal protein L13	polymer	138	15699.7	2	UniProt (P60488) Pfam (PF00572)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
8	H, MA (J1, J2)	50S ribosomal protein L14	polymer	122	13323.6	2	UniProt (Q5SHP8) Pfam (PF00238)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
9	I, NA (K1, K2)	50S ribosomal protein L15	polymer	150	16319.1	2	UniProt (Q5SHQ7) Pfam (PF00828)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
10	J, OA (L1, L2)	50S ribosomal protein L16	polymer	141	15993.9	2	UniProt (P60489) Pfam (PF00252)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
11	K, PA (M1, M2)	50S ribosomal protein L17	polymer	117	13619.0	2	UniProt (Q9Z9H5) Pfam (PF01196)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
12	L, QA (N1, N2)	50S ribosomal protein L18	polymer	111	12508.6	2	UniProt (Q5SHQ4) Pfam (PF00861)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	TL24
13	M, RA (O1, O2)	50S ribosomal protein L19	polymer	137	16218.8	2	UniProt (P60490) Pfam (PF01245)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
14	N, SA (P1, P2)	50S ribosomal protein L20	polymer	117	13648.1	2	UniProt (P60491) Pfam (PF00453)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
15	O, TA (Q1, Q2)	50S ribosomal protein L21	polymer	101	11069.2	2	UniProt (P60492) Pfam (PF00829)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
16	P, UA (R1, R2)	50S ribosomal protein L22	polymer	113	12808.1	2	UniProt (Q5SHP3) Pfam (PF00237)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
17	Q, VA (S1, S2)	50S ribosomal protein L23	polymer	92	10273.1	2	UniProt (Q5SHP0) Pfam (PF00276)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
18	R, WA (T1, T2)	50S ribosomal protein L24	polymer	102	11238.7	2	UniProt (Q5SHP9) Pfam (PF00467) Pfam (PF17136)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
19	S, XA (U1, U2)	50S ribosomal protein L25	polymer	179	20268.3	2	UniProt (Q5SHZ1) Pfam (PF01386) Pfam (PF14693)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	TL5
20	T, YA (V1, V2)	50S ribosomal protein L27	polymer	77	8703.0	2	UniProt (P60493) Pfam (PF01016)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
21	U, ZA (W1, W2)	50S ribosomal protein L28	polymer	97	10873.0	2	UniProt (P60494) Pfam (PF00830)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
22	AB, V (X1, X2)	50S ribosomal protein L29	polymer	69	8296.7	2	UniProt (Q5SHP6) Pfam (PF00831)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
23	BB, W (Y1, Y2)	50S ribosomal protein L30	polymer	59	6667.9	2	UniProt (Q5SHQ6) Pfam (PF00327)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
24	CB, X (Z1, Z2)	50S ribosomal protein L31	polymer	63	7377.5	2	UniProt (Q5SJE1) Pfam (PF01197)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
25	DB, Y (a1, a2)	50S ribosomal protein L32	polymer	59	6590.9	2	UniProt (P80339) Pfam (PF01783)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
26	EB, Z (b1, b2)	50S ribosomal protein L33	polymer	45	5602.6	2	UniProt (P35871) Pfam (PF00471)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
27	AA, FB (c1, c2)	50S ribosomal protein L34	polymer	49	6132.4	2	UniProt (P80340) Pfam (PF00468)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
28	BA, GB (d1, d2)	50S ribosomal protein L35	polymer	61	6985.6	2	UniProt (Q5SKU1) Pfam (PF01632)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
29	CA, HB (A1, A2)	23S ribosomal RNA	polymer	2912	947013.0	2	GenBank (55771382)	Thermus thermophilus HB8
30	DA, IB (B1, B2)	5S ribosomal RNA	polymer	122	39540.6	2	GenBank (55771382)	Thermus thermophilus HB8
31	EA, JB (e1, e2)	50S ribosomal protein L36	polymer	36	4304.2	2	UniProt (Q5SHR2) Pfam (PF00444)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	Ribosomal protein B
32	HC, KB (B3, B4)	30S ribosomal protein S2	polymer	237	27330.6	2	UniProt (P80371) Pfam (PF00318)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
33	IC, LB (C3, C4)	30S ribosomal protein S3	polymer	206	22862.4	2	UniProt (P80372) Pfam (PF07650) Pfam (PF00189)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
34	JC, MB (D3, D4)	30S ribosomal protein S4	polymer	208	24242.3	2	UniProt (P80373) Pfam (PF00163) Pfam (PF01479)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
35	KC, NB (E3, E4)	30S ribosomal protein S5	polymer	151	16460.2	2	UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
36	LC, OB (F3, F4)	30S ribosomal protein S6	polymer	101	11988.8	2	UniProt (Q5SLP8) Pfam (PF01250)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	TS9
37	MC, PB (G3, G4)	30S ribosomal protein S7	polymer	155	17919.8	2	UniProt (P17291) Pfam (PF00177)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
38	NC, QB (H3, H4)	30S ribosomal protein S8	polymer	138	15868.6	2	UniProt (P0DOY9) Pfam (PF00410)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
39	OC, RB (I3, I4)	30S ribosomal protein S9	polymer	127	14279.4	2	UniProt (P80374) Pfam (PF00380)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
40	PC, SB (J3, J4)	30S ribosomal protein S10	polymer	99	11398.3	2	UniProt (Q5SHN7) Pfam (PF00338)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
41	QC, TB (K3, K4)	30S ribosomal protein S11	polymer	118	12519.3	2	UniProt (P80376) Pfam (PF00411)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
42	RC, UB (L3, L4)	30S ribosomal protein S12	polymer	125	13875.4	2	UniProt (Q5SHN3) Pfam (PF00164)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
43	SC, VB (M3, M4)	30S ribosomal protein S13	polymer	117	13308.5	2	UniProt (P80377) Pfam (PF00416)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
44	TC, WB (N3, N4)	30S ribosomal protein S14 type Z	polymer	60	7027.5	2	UniProt (P0DOY6) Pfam (PF00253)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
45	UC, XB (O3, O4)	30S ribosomal protein S15	polymer	88	10447.2	2	UniProt (Q5SJ76) Pfam (PF00312)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
46	VC, YB (P3, P4)	30S ribosomal protein S16	polymer	84	9995.5	2	UniProt (Q5SJH3) Pfam (PF00886)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
47	WC, ZB (Q3, Q4)	30S ribosomal protein S17	polymer	100	11880.1	2	UniProt (P0DOY7) Pfam (PF00366)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
48	AC, XC (R3, R4)	30S ribosomal protein S18	polymer	62	7312.7	2	UniProt (Q5SLQ0) Pfam (PF01084)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
49	BC, YC (S3, S4)	30S ribosomal protein S19	polymer	78	8872.3	2	UniProt (Q5SHP2) Pfam (PF00203)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
50	CC, ZC (T3, T4)	30S ribosomal protein S20	polymer	99	10921.1	2	UniProt (P80380) Pfam (PF01649)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
51	AD, DC (U3, U4)	30S ribosomal protein Thx	polymer	25	3089.7	2	UniProt (Q5SIH3) Pfam (PF17070)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	S31
52	BD, EC (X3, W4)	Ribosome hibernation promoting factor	polymer	57	6769.8	2	UniProt (Q5SIS0) Pfam (PF16321)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	HPF
53	CD, FC (A3, A4)	16S ribosomal RNA	polymer	1506	489002.5	2	GenBank (55771382)	Thermus thermophilus HB8
54	DD, GC (V3, V4)	Ribosome hibernation promoting factor	polymer	119	13694.6	2	UniProt (Q5SIS0) Pfam (PF02482)	Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)	HPF

Sequence modifications

A1, A2: 1 - 2913 (GenBank: 55771382)

PDB	External Database	Details
U 156	Unk 9395	conflict
A 682	G 9920	conflict
C 686	G 9924	conflict
G 697	C 9935	conflict
A 701	C 9939	conflict
U 1106	G 10344	conflict
A 1128	C 10366	conflict

Contents of the asymmetric unit

Polymers	Number of chains	108
	Total formula weight	4284946.6
All*	Total formula weight	4284946.6

*Water molecules are not included.