6GZ3

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

This is a large structure.

Entity

Chain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
A228S ribosomal RNApolymer36121170164.91
Oryctolagus cuniculus (Rabbit)
Bvap/P-site tRNApolymer7624437.51
Oryctolagus cuniculus (Rabbit)
BxmRNApolymer123837.31
Enterobacteria phage SP6
Bwpe/E-site-tRNApolymer7624533.61
GenBank (M14867.1)
Saccharomyces cerevisiae
B118S ribosomal RNApolymer1708551108.21
Oryctolagus cuniculus (Rabbit)
BDribosomal protein uS3polymer22024357.61
Oryctolagus cuniculus (Rabbit)
BFRibosomal protein S5polymer19021424.81
UniProt (G1TFM5)
Pfam (PF00177)
Oryctolagus cuniculus (Rabbit)
BKribosomal protein eS10polymer9811774.01
UniProt (G1TPV3)
Pfam (PF03501)
Oryctolagus cuniculus (Rabbit)
BM40S ribosomal protein S12polymer12013393.71
UniProt (G1SFR8)
Pfam (PF01248)
Oryctolagus cuniculus (Rabbit)
BPribosomal protein uS19polymer12014273.91
Oryctolagus cuniculus (Rabbit)
BQribosomal protein uS9polymer13915765.51
Oryctolagus cuniculus (Rabbit)
BRribosomal protein eS17polymer12514447.81
UniProt (G1TU13)
Oryctolagus cuniculus (Rabbit)
BSribosomal protein uS13polymer13916383.11
UniProt (G1TPG3)
Pfam (PF00416)
Oryctolagus cuniculus (Rabbit)
BTribosomal protein eS19polymer14315822.21
Oryctolagus cuniculus (Rabbit)
BUribosomal protein uS10polymer9711029.11
Oryctolagus cuniculus (Rabbit)
BZribosomal protein eS25polymer869801.71
UniProt (G1TDB3)
Oryctolagus cuniculus (Rabbit)
BcRibosomal protein S28polymer627007.11
UniProt (G1TIB4)
Pfam (PF01200)
Oryctolagus cuniculus (Rabbit)
Bdribosomal protein uS14polymer516121.21
UniProt (G1U7M4)
Pfam (PF00253)
Oryctolagus cuniculus (Rabbit)
BfRibosomal protein S27apolymer738645.31
UniProt (G1SK22)
Pfam (PF01599)
Oryctolagus cuniculus (Rabbit)
Bgribosomal protein RACK 1polymer31434726.21
UniProt (G1SJB4)
Pfam (PF00400)
Oryctolagus cuniculus (Rabbit)
BAribosomal protein uS2polymer21524245.71
Oryctolagus cuniculus (Rabbit)37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40
BB40S ribosomal protein S3apolymer21224660.01
UniProt (G1SS70)
Oryctolagus cuniculus (Rabbit)
BCribosomal protein uS5polymer22224575.01
Oryctolagus cuniculus (Rabbit)
BEribosomal protein eS4polymer25728893.01
Oryctolagus cuniculus (Rabbit)
BG40S ribosomal protein S6polymer23226913.91
UniProt (G1TM55)
Pfam (PF01092)
Oryctolagus cuniculus (Rabbit)
BH40S ribosomal protein S7polymer18320990.51
UniProt (G1SVB0)
Oryctolagus cuniculus (Rabbit)
BIribosomal protein eS8polymer20724132.21
Oryctolagus cuniculus (Rabbit)
BJRibosomal protein S9 (Predicted)polymer17921222.21
UniProt (B7NZS8)
Pfam (PF00163)
Pfam (PF01479)
Oryctolagus cuniculus (Rabbit)
BLRibosomal protein S11polymer15317910.21
UniProt (G1TRM4)
Pfam (PF00366)
Oryctolagus cuniculus (Rabbit)
BNribosomal protein uS15polymer14917057.11
UniProt (G1SP51)
Pfam (PF00312)
Oryctolagus cuniculus (Rabbit)
BOribosomal protein uS11polymer13614544.71
Oryctolagus cuniculus (Rabbit)
BVribosomal protein eS21polymer818863.11
Oryctolagus cuniculus (Rabbit)
BWRibosomal protein S15apolymer12914734.41
UniProt (G1TG89)
Pfam (PF00410)
Oryctolagus cuniculus (Rabbit)
BXRibosomal protein S23polymer14115626.41
UniProt (G1SZ47)
Pfam (PF00164)
Oryctolagus cuniculus (Rabbit)
BYribosomal protein eS24polymer12514489.21
Oryctolagus cuniculus (Rabbit)
Baribosomal protein eS26polymer9711087.11
Oryctolagus cuniculus (Rabbit)
Bbribosomal protein eS27polymer809000.61
Oryctolagus cuniculus (Rabbit)
Beribosomal protein eS30polymer556239.41
Oryctolagus cuniculus (Rabbit)
A35.8S ribosomal RNApolymer15750449.81
Oryctolagus cuniculus (Rabbit)
A45S ribosomal RNApolymer11938385.81
Oryctolagus cuniculus (Rabbit)
AARibosomal protein L8polymer25227456.21
UniProt (G1TT27)
Pfam (PF00181)
Pfam (PF03947)
Oryctolagus cuniculus (Rabbit)
ABribosomal protein uL3polymer39445222.91
Oryctolagus cuniculus (Rabbit)
ACribosomal protein uL4polymer36341171.51
Oryctolagus cuniculus (Rabbit)
ADribosomal protein uL18polymer29434091.41
Oryctolagus cuniculus (Rabbit)
AEribosomal protein eL6polymer19422262.41
Oryctolagus cuniculus (Rabbit)
AFribosomal protein uL30polymer23427733.11
Oryctolagus cuniculus
AGribosomal protein eL8polymer23426724.61
Oryctolagus cuniculus
AHribosomal protein uL6polymer19121770.41
Oryctolagus cuniculus
AIRibosomal protein L10 (Predicted)polymer21124381.81
UniProt (B7NZQ2)
Pfam (PF00252)
Oryctolagus cuniculus (Rabbit)
AJRibosomal protein L11polymer16919270.31
UniProt (G1TUB8)
Pfam (PF00281)
Pfam (PF00673)
Oryctolagus cuniculus (Rabbit)
ALribosomal protein eL13polymer20523574.71
Oryctolagus cuniculus
AMribosomal protein eL14polymer13916220.31
Oryctolagus cuniculus
ANRibosomal protein L15polymer20324076.11
UniProt (G1T0C1)
Pfam (PF00827)
Oryctolagus cuniculus (Rabbit)
AOribosomal protein uL13polymer19522820.41
Oryctolagus cuniculus
APribosomal protein uL22polymer15317757.61
Oryctolagus cuniculus
AQribosomal protein eL18polymer18721556.51
Oryctolagus cuniculus
ARribosomal protein eL19polymer18121742.11
Oryctolagus cuniculus
ASribosomal protein eL20polymer17520661.31
Oryctolagus cuniculus
ATribosomal protein eL21polymer15718276.51
UniProt (G1SHQ2)
Oryctolagus cuniculus (Rabbit)
AUribosomal protein eL22polymer9911481.21
Oryctolagus cuniculus
AVRibosomal protein L23polymer12913828.31
UniProt (G1T6D1)
Pfam (PF00238)
Oryctolagus cuniculus (Rabbit)
AWribosomal protein eL24polymer12114087.41
UniProt (G1SE28)
Oryctolagus cuniculus (Rabbit)
AXribosomal protein uL23polymer11713614.01
Oryctolagus cuniculus (Rabbit)
AYRibosomal protein L26polymer12715161.91
UniProt (G1SQH0)
Pfam (PF00467)
Pfam (PF16906)
Oryctolagus cuniculus (Rabbit)
AZ60S ribosomal protein L27polymer13415647.61
UniProt (G1TXF6)
Pfam (PF00467)
Pfam (PF01777)
Oryctolagus cuniculus (Rabbit)
Aaribosomal protein uL15polymer14716473.31
Oryctolagus cuniculus (Rabbit)
Abribosomal protein eL29polymer687996.41
Oryctolagus cuniculus (Rabbit)
Acribosomal protein eL30polymer10311500.61
Oryctolagus cuniculus (Rabbit)
Adribosomal protein eL31polymer10612506.61
UniProt (G1SHG0)
Pfam (PF01198)
Oryctolagus cuniculus (Rabbit)
Aeribosomal protein eL32polymer12915179.21
UniProt (G1TUN8)
Pfam (PF01655)
Oryctolagus cuniculus (Rabbit)
Afribosomal protein eL33polymer10912433.51
Oryctolagus cuniculus (Rabbit)
Agribosomal protein eL34polymer11412994.61
Oryctolagus cuniculus
Ahribosomal protein uL29polymer12214462.41
Oryctolagus cuniculus
Airibosomal protein eL36polymer9711373.71
Oryctolagus cuniculus (Rabbit)
AjRibosomal protein L37polymer849864.61
UniProt (U3KPD5)
Pfam (PF01907)
Oryctolagus cuniculus (Rabbit)
Akribosomal protein eL38polymer698107.81
Oryctolagus cuniculus
Alribosomal protein eL39polymer506295.61
UniProt (G1SYU7)
Pfam (PF00832)
Oryctolagus cuniculus (Rabbit)
Amribosomal protein eL40polymer505957.21
Oryctolagus cuniculus
Anribosomal protein eL41polymer253473.51
Oryctolagus cuniculus
Aoribosomal protein eL42polymer10512345.81
UniProt (G1T040)
Pfam (PF00935)
Oryctolagus cuniculus (Rabbit)
Apribosomal protein eL43polymer9110168.21
UniProt (G1SY53)
Pfam (PF01780)
Oryctolagus cuniculus (Rabbit)
Atribosomal protein eL28polymer12213991.41
Oryctolagus cuniculus (Rabbit)
AuRibosomal proteinpolymer21724879.41
UniProt (G1SKZ8)
Pfam (PF00687)
Oryctolagus cuniculus (Rabbit)
AqRibosomal protein L12polymer15116290.81
UniProt (G1SMR7)
Pfam (PF00298)
Oryctolagus cuniculus (Rabbit)
AKribosomal protein uL10polymer20222217.81
Oryctolagus cuniculus (Rabbit)
Cteukaryotic elongation factor 2 (eEF2)polymer85395056.71
Oryctolagus cuniculus (Rabbit)
MAGNESIUM IONnon-polymer24.3327
ZINC IONnon-polymer65.45
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTERnon-polymer522.21

Sequence viewer

Contents of the asymmetric unit

PolymersNumber of chains86
Total molecular weight3317234.5
Non-Polymers*Number of molecules333
Total molecular weight8797.0
All*Total molecular weight3326031.4
*Water molecules are not included.
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