6GZ3
tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A2) | 28S ribosomal RNA | polymer | 3612 | 1170164.9 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 2 | B (Bv) | ap/P-site tRNA | polymer | 76 | 24437.5 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 3 | C (Bx) | mRNA | polymer | 12 | 3837.3 | 1 | Enterobacteria phage SP6 | ||
| 4 | D (Bw) | pe/E-site-tRNA | polymer | 76 | 24533.6 | 1 | GenBank (176421) | Saccharomyces cerevisiae | |
| 5 | E (B1) | 18S ribosomal RNA | polymer | 1708 | 551108.2 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 6 | F (BD) | ribosomal protein uS3 | polymer | 220 | 24357.6 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 7 | G (BF) | Ribosomal protein S5 | polymer | 190 | 21424.8 | 1 | UniProt (G1TFM5) Pfam (PF00177) | Oryctolagus cuniculus (Rabbit) | |
| 8 | H (BK) | ribosomal protein eS10 | polymer | 98 | 11774.0 | 1 | UniProt (G1TPV3) Pfam (PF03501) | Oryctolagus cuniculus (Rabbit) | |
| 9 | I (BM) | 40S ribosomal protein S12 | polymer | 120 | 13393.7 | 1 | UniProt (G1SFR8) Pfam (PF01248) | Oryctolagus cuniculus (Rabbit) | |
| 10 | J (BP) | ribosomal protein uS19 | polymer | 120 | 14273.9 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 11 | K (BQ) | ribosomal protein uS9 | polymer | 139 | 15765.5 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 12 | L (BR) | ribosomal protein eS17 | polymer | 125 | 14447.8 | 1 | UniProt (G1TU13) Pfam (PF00833) | Oryctolagus cuniculus (Rabbit) | |
| 13 | M (BS) | ribosomal protein uS13 | polymer | 139 | 16383.1 | 1 | UniProt (G1TPG3) Pfam (PF00416) | Oryctolagus cuniculus (Rabbit) | |
| 14 | N (BT) | ribosomal protein eS19 | polymer | 143 | 15822.2 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 15 | O (BU) | ribosomal protein uS10 | polymer | 97 | 11029.1 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 16 | P (BZ) | ribosomal protein eS25 | polymer | 86 | 9801.7 | 1 | UniProt (G1TDB3) Pfam (PF03297) | Oryctolagus cuniculus (Rabbit) | |
| 17 | Q (Bc) | Ribosomal protein S28 | polymer | 62 | 7007.1 | 1 | UniProt (G1TIB4) Pfam (PF01200) | Oryctolagus cuniculus (Rabbit) | |
| 18 | R (Bd) | ribosomal protein uS14 | polymer | 51 | 6121.2 | 1 | UniProt (G1U7M4) Pfam (PF00253) | Oryctolagus cuniculus (Rabbit) | |
| 19 | S (Bf) | Ribosomal protein S27a | polymer | 73 | 8645.3 | 1 | UniProt (G1SK22) Pfam (PF00240) Pfam (PF01599) | Oryctolagus cuniculus (Rabbit) | |
| 20 | T (Bg) | ribosomal protein RACK 1 | polymer | 314 | 34726.2 | 1 | UniProt (G1SJB4) Pfam (PF00400) | Oryctolagus cuniculus (Rabbit) | |
| 21 | U (BA) | ribosomal protein uS2 | polymer | 215 | 24245.7 | 1 | Oryctolagus cuniculus (Rabbit) | 37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40 | |
| 22 | V (BB) | 40S ribosomal protein S3a | polymer | 212 | 24660.0 | 1 | UniProt (G1SS70) Pfam (PF01015) | Oryctolagus cuniculus (Rabbit) | |
| 23 | W (BC) | ribosomal protein uS5 | polymer | 222 | 24575.0 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 24 | X (BE) | ribosomal protein eS4 | polymer | 257 | 28893.0 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 25 | Y (BG) | 40S ribosomal protein S6 | polymer | 232 | 26913.9 | 1 | UniProt (G1TM55) Pfam (PF01092) | Oryctolagus cuniculus (Rabbit) | |
| 26 | Z (BH) | 40S ribosomal protein S7 | polymer | 183 | 20990.5 | 1 | UniProt (G1SVB0) | Oryctolagus cuniculus (Rabbit) | |
| 27 | AA (BI) | ribosomal protein eS8 | polymer | 207 | 24132.2 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 28 | BA (BJ) | Ribosomal protein S9 (Predicted) | polymer | 179 | 21222.2 | 1 | UniProt (B7NZS8) Pfam (PF00163) Pfam (PF01479) | Oryctolagus cuniculus (Rabbit) | |
| 29 | CA (BL) | Ribosomal protein S11 | polymer | 153 | 17910.2 | 1 | UniProt (G1TRM4) Pfam (PF16205) Pfam (PF00366) | Oryctolagus cuniculus (Rabbit) | |
| 30 | DA (BN) | ribosomal protein uS15 | polymer | 149 | 17057.1 | 1 | UniProt (G1SP51) Pfam (PF08069) Pfam (PF00312) | Oryctolagus cuniculus (Rabbit) | |
| 31 | EA (BO) | ribosomal protein uS11 | polymer | 136 | 14544.7 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 32 | FA (BV) | ribosomal protein eS21 | polymer | 81 | 8863.1 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 33 | GA (BW) | Ribosomal protein S15a | polymer | 129 | 14734.4 | 1 | UniProt (G1TG89) Pfam (PF00410) | Oryctolagus cuniculus (Rabbit) | |
| 34 | HA (BX) | Ribosomal protein S23 | polymer | 141 | 15626.4 | 1 | UniProt (G1SZ47) Pfam (PF00164) | Oryctolagus cuniculus (Rabbit) | |
| 35 | IA (BY) | ribosomal protein eS24 | polymer | 125 | 14489.2 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 36 | JA (Ba) | ribosomal protein eS26 | polymer | 97 | 11087.1 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 37 | KA (Bb) | ribosomal protein eS27 | polymer | 80 | 9000.6 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 38 | LA (Be) | ribosomal protein eS30 | polymer | 55 | 6239.4 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 39 | MA (A3) | 5.8S ribosomal RNA | polymer | 157 | 50449.8 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 40 | NA (A4) | 5S ribosomal RNA | polymer | 119 | 38385.8 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 41 | OA (AA) | Ribosomal protein L8 | polymer | 252 | 27456.2 | 1 | UniProt (G1TT27) Pfam (PF00181) Pfam (PF03947) | Oryctolagus cuniculus (Rabbit) | |
| 42 | PA (AB) | ribosomal protein uL3 | polymer | 394 | 45222.9 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 43 | QA (AC) | ribosomal protein uL4 | polymer | 363 | 41171.5 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 44 | RA (AD) | ribosomal protein uL18 | polymer | 294 | 34091.4 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 45 | SA (AE) | ribosomal protein eL6 | polymer | 194 | 22262.4 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 46 | TA (AF) | ribosomal protein uL30 | polymer | 234 | 27733.1 | 1 | Oryctolagus cuniculus | ||
| 47 | UA (AG) | ribosomal protein eL8 | polymer | 234 | 26724.6 | 1 | Oryctolagus cuniculus | ||
| 48 | VA (AH) | ribosomal protein uL6 | polymer | 191 | 21770.4 | 1 | Oryctolagus cuniculus | ||
| 49 | WA (AI) | Ribosomal protein L10 (Predicted) | polymer | 211 | 24381.8 | 1 | UniProt (B7NZQ2) Pfam (PF00252) | Oryctolagus cuniculus (Rabbit) | |
| 50 | XA (AJ) | Ribosomal protein L11 | polymer | 169 | 19270.3 | 1 | UniProt (G1TUB8) Pfam (PF00281) Pfam (PF00673) | Oryctolagus cuniculus (Rabbit) | |
| 51 | YA (AL) | ribosomal protein eL13 | polymer | 205 | 23574.7 | 1 | Oryctolagus cuniculus | ||
| 52 | ZA (AM) | ribosomal protein eL14 | polymer | 139 | 16220.3 | 1 | Oryctolagus cuniculus | ||
| 53 | AB (AN) | Ribosomal protein L15 | polymer | 203 | 24076.1 | 1 | UniProt (G1T0C1) Pfam (PF00827) | Oryctolagus cuniculus (Rabbit) | |
| 54 | BB (AO) | ribosomal protein uL13 | polymer | 195 | 22820.4 | 1 | Oryctolagus cuniculus | ||
| 55 | CB (AP) | ribosomal protein uL22 | polymer | 153 | 17757.6 | 1 | Oryctolagus cuniculus | ||
| 56 | DB (AQ) | ribosomal protein eL18 | polymer | 187 | 21556.5 | 1 | Oryctolagus cuniculus | ||
| 57 | EB (AR) | ribosomal protein eL19 | polymer | 181 | 21742.1 | 1 | Oryctolagus cuniculus | ||
| 58 | FB (AS) | ribosomal protein eL20 | polymer | 175 | 20661.3 | 1 | Oryctolagus cuniculus | ||
| 59 | GB (AT) | ribosomal protein eL21 | polymer | 157 | 18276.5 | 1 | UniProt (G1SHQ2) Pfam (PF01157) | Oryctolagus cuniculus (Rabbit) | |
| 60 | HB (AU) | ribosomal protein eL22 | polymer | 99 | 11481.2 | 1 | Oryctolagus cuniculus | ||
| 61 | IB (AV) | Ribosomal protein L23 | polymer | 129 | 13828.3 | 1 | UniProt (G1T6D1) Pfam (PF00238) | Oryctolagus cuniculus (Rabbit) | |
| 62 | JB (AW) | ribosomal protein eL24 | polymer | 121 | 14087.4 | 1 | UniProt (G1SE28) Pfam (PF01246) | Oryctolagus cuniculus (Rabbit) | |
| 63 | KB (AX) | ribosomal protein uL23 | polymer | 117 | 13614.0 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 64 | LB (AY) | Ribosomal protein L26 | polymer | 127 | 15161.9 | 1 | UniProt (G1SQH0) Pfam (PF16906) Pfam (PF00467) | Oryctolagus cuniculus (Rabbit) | |
| 65 | MB (AZ) | 60S ribosomal protein L27 | polymer | 134 | 15647.6 | 1 | UniProt (G1TXF6) Pfam (PF00467) Pfam (PF01777) | Oryctolagus cuniculus (Rabbit) | |
| 66 | NB (Aa) | ribosomal protein uL15 | polymer | 147 | 16473.3 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 67 | OB (Ab) | ribosomal protein eL29 | polymer | 68 | 7996.4 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 68 | PB (Ac) | ribosomal protein eL30 | polymer | 103 | 11500.6 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 69 | QB (Ad) | ribosomal protein eL31 | polymer | 106 | 12506.6 | 1 | UniProt (G1SHG0) Pfam (PF01198) | Oryctolagus cuniculus (Rabbit) | |
| 70 | RB (Ae) | ribosomal protein eL32 | polymer | 129 | 15179.2 | 1 | UniProt (G1TUN8) Pfam (PF01655) | Oryctolagus cuniculus (Rabbit) | |
| 71 | SB (Af) | ribosomal protein eL33 | polymer | 109 | 12433.5 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 72 | TB (Ag) | ribosomal protein eL34 | polymer | 114 | 12994.6 | 1 | Oryctolagus cuniculus | ||
| 73 | UB (Ah) | ribosomal protein uL29 | polymer | 122 | 14462.4 | 1 | Oryctolagus cuniculus | ||
| 74 | VB (Ai) | ribosomal protein eL36 | polymer | 97 | 11373.7 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 75 | WB (Aj) | Ribosomal protein L37 | polymer | 84 | 9864.6 | 1 | UniProt (U3KPD5) Pfam (PF01907) | Oryctolagus cuniculus (Rabbit) | |
| 76 | XB (Ak) | ribosomal protein eL38 | polymer | 69 | 8107.8 | 1 | Oryctolagus cuniculus | ||
| 77 | YB (Al) | ribosomal protein eL39 | polymer | 50 | 6295.6 | 1 | UniProt (G1SYU7) Pfam (PF00832) | Oryctolagus cuniculus (Rabbit) | |
| 78 | ZB (Am) | ribosomal protein eL40 | polymer | 50 | 5957.2 | 1 | Oryctolagus cuniculus | ||
| 79 | AC (An) | ribosomal protein eL41 | polymer | 25 | 3473.5 | 1 | Oryctolagus cuniculus | ||
| 80 | BC (Ao) | ribosomal protein eL42 | polymer | 105 | 12345.8 | 1 | UniProt (G1T040) Pfam (PF00935) | Oryctolagus cuniculus (Rabbit) | |
| 81 | CC (Ap) | ribosomal protein eL43 | polymer | 91 | 10168.2 | 1 | UniProt (G1SY53) Pfam (PF01780) | Oryctolagus cuniculus (Rabbit) | |
| 82 | DC (At) | ribosomal protein eL28 | polymer | 122 | 13991.4 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 83 | EC (Au) | Ribosomal protein | polymer | 217 | 24879.4 | 1 | UniProt (G1SKZ8) Pfam (PF00687) | Oryctolagus cuniculus (Rabbit) | |
| 84 | FC (Aq) | Ribosomal protein L12 | polymer | 151 | 16290.8 | 1 | UniProt (G1SMR7) Pfam (PF03946) Pfam (PF00298) | Oryctolagus cuniculus (Rabbit) | |
| 85 | GC (AK) | ribosomal protein uL10 | polymer | 202 | 22217.8 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 86 | HC (Ct) | eukaryotic elongation factor 2 (eEF2) | polymer | 853 | 95056.7 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 87 | AD, AE, AF, AG, AH... (A2, B1, BS, Bd, Ba...) | MAGNESIUM ION | non-polymer | 24.3 | 327 | Chemie (MG) | |||
| 88 | AP, BP, CO, EO, XO (Ao, Ap, Bd, Ba, Aj) | ZINC ION | non-polymer | 65.4 | 5 | Chemie (ZN) | |||
| 89 | CP (Ct) | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | non-polymer | 522.2 | 1 | Chemie (GNP) |
Sequence modifications
AI: 3 - 213 (UniProt: B7NZQ2)
| PDB | External Database | Details |
|---|---|---|
| Ile 149 | Val 149 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 86 |
| Total formula weight | 3317234.5 | |
| Non-Polymers* | Number of molecules | 333 |
| Total formula weight | 8797.0 | |
| All* | Total formula weight | 3326031.4 |
