6GSI
Feline Calicivirus Strain F9 bound to a soluble ectodomain fragment of feline junctional adhesion molecule A - leading to assembly of a portal structure at a unique three-fold axis.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D | Capsid protein | polymer | 669 | 73346.7 | 4 | UniProt (P27406) Pfam (PF00915) In PDB | Feline calicivirus strain F9 (FCV) | Coat protein,CP,VP1 |
| 2 | E, F, G, H | Junctional adhesion molecule A | polymer | 202 | 22180.7 | 4 | UniProt (Q2WGK2) Pfam (PF07686) Pfam (PF13927) In PDB | Felis catus (Domestic cat) | JAM-A,Junctional adhesion molecule 1,JAM-1 |
| 3 | I, J, K, L | VP2 | polymer | 106 | 12209.8 | 4 | UniProt (P28711) Pfam (PF05332) In PDB | Feline calicivirus strain F9 (FCV) | Minor capsid protein |
| 4 | A, B, C, D | POTASSIUM ION | non-polymer | 39.1 | 4 | Chemie (K) |
Sequence modifications
A, B, C, D: 1 - 669 (UniProt: P27406)
I, J, K, L: 1 - 106 (UniProt: P28711)
| PDB | External Database | Details |
|---|---|---|
| Asn 13 | Asp 13 | conflict |
| Arg 19 | Lys 19 | conflict |
| Asp 23 | Asn 23 | conflict |
| Lys 26 | Asn 26 | conflict |
| Asp 34 | Ser 34 | conflict |
| Gln 56 | Arg 56 | conflict |
| Gln 60 | Glu 60 | conflict |
| Tyr 76 | Phe 76 | conflict |
| Glu 77 | Asp 77 | conflict |
| Ile 79 | Val 79 | conflict |
| Ala 82 | Val 82 | conflict |
| Asp 89 | Gly 89 | conflict |
| Glu 109 | Lys 109 | conflict |
| Lys 112 | Ala 112 | conflict |
| Ala 113 | Gly 113 | conflict |
| Asn 117 | Asp 117 | conflict |
| Met 120 | Leu 120 | conflict |
| Phe 121 | Ile 121 | conflict |
| Gly 127 | - | insertion |
| Pro 139 | Met 138 | conflict |
| Ala 153 | Thr 152 | conflict |
| Asp 217 | Glu 216 | conflict |
| Ser 268 | Cys 267 | conflict |
| Ile 269 | Leu 268 | conflict |
| Ser 304 | Ala 303 | conflict |
| Ala 319 | Pro 318 | conflict |
| Val 338 | Ile 337 | conflict |
| Ser 346 | Thr 345 | conflict |
| His 355 | Tyr 354 | conflict |
| Thr 357 | Ser 356 | conflict |
| Tyr 389 | Phe 388 | conflict |
| Thr 393 | Ser 392 | conflict |
| Ile 394 | Val 393 | conflict |
| Ser 397 | Thr 396 | conflict |
| Lys 399 | Gln 398 | conflict |
| Glu 428 | Gly 427 | conflict |
| Lys 429 | Glu 428 | conflict |
| Thr 431 | Ile 430 | conflict |
| Lys 441 | Gly 440 | conflict |
| Ser 442 | Thr 441 | conflict |
| Ala 450 | Thr 449 | conflict |
| Gly 454 | Thr 453 | conflict |
| Val 457 | Ile 456 | conflict |
| Val 459 | Lys 458 | conflict |
| Lys 465 | Arg 464 | conflict |
| Lys 493 | - | insertion |
| Val 494 | Leu 492 | conflict |
| - | Gly 494 | deletion |
| - | Asp 495 | deletion |
| - | Asn 496 | deletion |
| - | Asn 497 | deletion |
| Ala 497 | Lys 499 | conflict |
| Glu 499 | Asn 501 | conflict |
| Ser 501 | Cys 503 | conflict |
| Val 503 | Thr 505 | conflict |
| Met 506 | Gln 508 | conflict |
| Thr 507 | Ser 509 | conflict |
| Ala 510 | Val 512 | conflict |
| Tyr 512 | Phe 514 | conflict |
| Thr 515 | Asn 517 | conflict |
| Glu 520 | Lys 522 | conflict |
| Val 521 | Ala 523 | conflict |
| Ser 529 | Ala 531 | conflict |
| Val 553 | Thr 555 | conflict |
| Ser 636 | Gly 638 | conflict |
| Ile 637 | Phe 639 | conflict |
| Thr 645 | Ser 647 | conflict |
| Ser 665 | Pro 667 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Lys 37 | Gln 37 | conflict |
| Met 39 | Ile 39 | conflict |
| Lys 40 | Gly 40 | conflict |
| His 43 | Arg 43 | conflict |
| Asp 85 | Asn 85 | conflict |
| Arg 101 | Lys 101 | conflict |
| Asn 106 | Ile 106 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 430948.6 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 156.4 | |
| All* | Total formula weight | 431105.0 |
