6G95
Crystal structure of Ebolavirus glycoprotein in complex with thioridazine
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Envelope glycoprotein | polymer | 330 | 36302.7 | 1 | UniProt (Q05320) Pfam (PF01611) In PDB | Zaire ebolavirus (strain Mayinga-76) (ZEBOV) | GP1,2,GP |
2 | B | Envelope glycoprotein | polymer | 168 | 18922.3 | 1 | UniProt (Q05320) Pfam (PF22307) In PDB | Zaire ebolavirus (strain Mayinga-76) (ZEBOV) | GP1,2,GP |
3 | C | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G22573RC) | |||
4 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 4 | Chemie (NAG) | |||
5 | A, B | GLYCEROL | non-polymer | 92.1 | 4 | Chemie (GOL) | |||
6 | A, B | DIMETHYL SULFOXIDE | non-polymer | 78.1 | 3 | Chemie (DMS) | |||
7 | B | 10-{2-[(2R)-1-methylpiperidin-2-yl]ethyl}-2-(methylsulfanyl)-10H-phenothiazine | non-polymer | 370.6 | 1 | Chemie (RTZ) | |||
8 | water | water | 18.0 | 94 | Chemie (HOH) |
Sequence modifications
A: 32 - 311 (UniProt: Q05320)
B: 502 - 632 (UniProt: Q05320)
PDB | External Database | Details |
---|---|---|
Glu 28 | - | expression tag |
Thr 29 | - | expression tag |
Gly 30 | - | expression tag |
Arg 31 | - | expression tag |
Ala 42 | Thr 42 | engineered mutation |
Unk 471 | - | expression tag |
Unk 472 | - | expression tag |
Unk 473 | - | expression tag |
Unk 474 | - | expression tag |
Unk 475 | - | expression tag |
Unk 476 | - | expression tag |
Unk 477 | - | expression tag |
Ser 478 | - | expression tag |
Thr 479 | - | expression tag |
His 480 | - | expression tag |
His 481 | - | expression tag |
Gln 482 | - | expression tag |
Asp 483 | - | expression tag |
Thr 484 | - | expression tag |
Gly 485 | - | expression tag |
Glu 486 | - | expression tag |
Glu 487 | - | expression tag |
Ser 488 | - | expression tag |
Ala 489 | - | expression tag |
Ser 490 | - | expression tag |
Ser 491 | - | expression tag |
Gly 492 | - | expression tag |
Lys 493 | - | expression tag |
Leu 494 | - | expression tag |
Gly 495 | - | expression tag |
Leu 496 | - | expression tag |
Ile 497 | - | expression tag |
Thr 498 | - | expression tag |
Asn 499 | - | expression tag |
Thr 500 | - | expression tag |
Ile 501 | - | expression tag |
Ala 502 | - | expression tag |
Gly 503 | - | expression tag |
Val 504 | - | expression tag |
Ala 505 | - | expression tag |
Gly 506 | - | expression tag |
Leu 507 | - | expression tag |
Ile 508 | - | expression tag |
Thr 509 | - | expression tag |
Gly 510 | - | expression tag |
Gly 511 | - | expression tag |
Arg 512 | - | expression tag |
Arg 513 | - | expression tag |
Thr 514 | - | expression tag |
Arg 515 | - | expression tag |
Arg 516 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Ala 613 | His 613 | engineered mutation |
Gly 633 | - | expression tag |
Ser 634 | - | expression tag |
Gly 635 | - | expression tag |
Tyr 636 | - | expression tag |
Ile 637 | - | expression tag |
Pro 638 | - | expression tag |
Glu 639 | - | expression tag |
Ala 640 | - | expression tag |
Pro 641 | - | expression tag |
Arg 642 | - | expression tag |
Asp 643 | - | expression tag |
Gly 644 | - | expression tag |
Gln 645 | - | expression tag |
Ala 646 | - | expression tag |
Tyr 647 | - | expression tag |
Val 648 | - | expression tag |
Arg 649 | - | expression tag |
Lys 650 | - | expression tag |
Asp 651 | - | expression tag |
Gly 652 | - | expression tag |
Glu 653 | - | expression tag |
Trp 654 | - | expression tag |
Val 655 | - | expression tag |
Leu 656 | - | expression tag |
Leu 657 | - | expression tag |
Ser 658 | - | expression tag |
Thr 659 | - | expression tag |
Phe 660 | - | expression tag |
Leu 661 | - | expression tag |
Gly 662 | - | expression tag |
Thr 663 | - | expression tag |
His 664 | - | expression tag |
His 665 | - | expression tag |
His 666 | - | expression tag |
His 667 | - | expression tag |
His 668 | - | expression tag |
His 669 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 55225.0 | |
Branched | Number of molecules | 1 |
Total formula weight | 748.7 | |
Non-Polymers* | Number of molecules | 12 |
Total formula weight | 1858.2 | |
All* | Total formula weight | 57831.9 |