6G5W
Crystal Structure of KDM4A with compound YP-03-038
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Lysine-specific demethylase 4A | polymer | 359 | 41767.5 | 2 | UniProt (O75164) Pfam (PF02375) Pfam (PF02373) | Homo sapiens (Human) | JmjC domain-containing histone demethylation protein 3A,Jumonji domain-containing protein 2A |
| 2 | C, J (A, B) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 3 | D, E, K, L (A, B) | NICKEL (II) ION | non-polymer | 58.7 | 4 | Chemie (NI) | |||
| 4 | F, G, N (A, B) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 3 | Chemie (EDO) | |||
| 5 | H, I, O (A, B) | CITRIC ACID | non-polymer | 192.1 | 3 | Chemie (CIT) | |||
| 6 | M (B) | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
| 7 | P (B) | (4~{R})-5-methyl-4-phenyl-2-pyridin-2-yl-pyrazolidin-3-one | non-polymer | 253.3 | 1 | Chemie (ENZ) | |||
| 8 | Q, R (A, B) | water | water | 18.0 | 436 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 83535.1 | |
| Non-Polymers* | Number of molecules | 14 |
| Total formula weight | 1404.5 | |
| All* | Total formula weight | 84939.5 |
