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6FXQ

Structure of coproheme decarboxylase from Listeria monocytogenes during turnover

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C, D, E
(A, B, C, D, E)
Putative heme-dependent peroxidase lmo2113polymer25028751.55UniProt (Q8Y5F1)
Pfam (PF06778)
Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)UPF0447 protein lmo2113
2F, J, K, Q, U
(A, B, C, D)
SODIUM IONnon-polymer23.05Chemie (NA)
3G, L, O, R, V
(A, B, C, D, E)
1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONIC ACID FERROUS COMPLEXnon-polymer708.55Chemie (FEC)
4H, M, P, S, W
(A, B, C, D, E)
harderoheme (III)non-polymer662.55Chemie (VOV)
5I, N, T, X
(A, B, D, E)
(4S)-2-METHYL-2,4-PENTANEDIOLnon-polymer118.24Chemie (MPD)
6AA, BA, CA, Y, Z
(C, D, E, A, B)
waterwater18.0711Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains5
Total formula weight143757.6
Non-Polymers*Number of molecules19
Total formula weight7442.9
All*Total formula weight151200.5
*Water molecules are not included.

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PDB entries from 2025-12-17

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