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6FPO

High resolution structure of native Hydrogenase (Hyd-1)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, C
(S, T)
Hydrogenase-1 small chainpolymer33536814.72UniProt (P69740)
Pfam (PF01058)
Pfam (PF14720)
UniProt (by SIFTS) (P69739)
Escherichia coli CFT073HYD1,Membrane-bound hydrogenase 1 small subunit,NiFe hydrogenase
2B, D
(L, M)
Hydrogenase-1 large chainpolymer58264767.42UniProt (P0ACD8)
Pfam (PF00374)
Escherichia coli K12HYD1,Membrane-bound hydrogenase 1 large subunit,NiFe hydrogenase
3E, O
(S, T)
IRON/SULFUR CLUSTERnon-polymer351.62Chemie (SF4)
4F, P
(S, T)
FE3-S4 CLUSTERnon-polymer295.82Chemie (F3S)
5G, Q
(S, T)
FE4-S3 CLUSTERnon-polymer319.62Chemie (SF3)
6H, R
(S, T)
DODECYL-BETA-D-MALTOSIDEnon-polymer510.62Chemie (LMT)
7I, S
(S, T)
CHLORIDE IONnon-polymer35.52Chemie (CL)
8J, T
(L, M)
CARBONMONOXIDE-(DICYANO) IRONnon-polymer135.92Chemie (FCO)
9K, U
(L, M)
NICKEL (II) IONnon-polymer58.72Chemie (NI)
10L, V
(L, M)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
11M
(L)
LITHIUM IONnon-polymer6.91Chemie (LI)
12N, W
(L, M)
SULFATE IONnon-polymer96.12Chemie (SO4)
13AA, X, Y, Z
(M, S, L, T)
waterwater18.01748Chemie (HOH)
Sequence modifications
S, T: 1 - 327 (UniProt: P69740)
PDBExternal DatabaseDetails
Arg 328-expression tag
Ser 329-expression tag
His 330-expression tag
His 331-expression tag
His 332-expression tag
His 333-expression tag
His 334-expression tag
His 335-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight203164.1
Non-Polymers*Number of molecules19
Total formula weight3663.0
All*Total formula weight206827.1
*Water molecules are not included.

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PDB entries from 2025-10-08

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