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6FKE

Structure of 3' phosphatase NExo (D146N) from Neisseria bound to product DNA hairpin

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Exodeoxyribonuclease IIIpolymer25829317.41UniProt (Q9K100)
Pfam (PF03372)
Neisseria meningitidis MC58
2B
(B)
DNA (5'-D(*GP*TP*AP*GP*CP*GP*AP*AP*GP*CP*TP*A)-3')polymer154658.01synthetic construct
3C
(A)
(4S)-2-METHYL-2,4-PENTANEDIOLnon-polymer118.21Chemie (MPD)
4D, E
(A)
MANGANESE (II) IONnon-polymer54.92Chemie (MN)
5F, G
(A, B)
waterwater18.0173Chemie (HOH)
Sequence modifications
A: 1 - 256 (UniProt: Q9K100)
PDBExternal DatabaseDetails
Gly -1-expression tag
Ala 0-expression tag
Asn 146Asp 146engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight33975.5
Non-Polymers*Number of molecules3
Total formula weight228.1
All*Total formula weight34203.5
*Water molecules are not included.

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PDB entries from 2025-12-03

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