6FHV
Crystal structure of Penicillium oxalicum Glucoamylase
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | Glucoamylase | polymer | 594 | 65448.8 | 1 | UniProt (S7ZIW0) Pfam (PF00723) Pfam (PF00686) In PDB | Penicillium oxalicum (strain 114-2 / CGMCC 5302) (Penicillium decumbens) | 1,4-alpha-D-glucan glucohydrolase,Glucan 1,4-alpha-glucosidase |
| 2 | B | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
| 3 | C | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 4 | A | 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | non-polymer | 282.3 | 1 | Chemie (B3P) | |||
| 5 | A | TETRAETHYLENE GLYCOL | non-polymer | 194.2 | 1 | Chemie (PG4) | |||
| 6 | A | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 1 | Chemie (PEG) | |||
| 7 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
| 8 | water | water | 18.0 | 257 | Chemie (HOH) |
Sequence modifications
A: 23 - 615 (UniProt: S7ZIW0)
| PDB | External Database | Details |
|---|---|---|
| Asn 74 | Asp 74 | conflict |
| Val 100 | Lys 100 | conflict |
| Arg 113 | Gln 113 | conflict |
| Ser 400 | Pro 400 | conflict |
| Tyr 406 | Phe 406 | conflict |
| Lys 408 | Ser 408 | conflict |
| Ser 415 | Ala 415 | conflict |
| Ala 444 | Thr 444 | conflict |
| Val 508 | Ile 508 | conflict |
| Phe 616 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 65448.8 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 1010.9 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 803.9 | |
| All* | Total formula weight | 67263.6 |
