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6F2T

Crystal structure of ectonucleotide phosphodiesterase/pyrophosphatase-3 (NPP3)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Ectonucleotide pyrophosphatase/phosphodiesterase family member 3polymer74985399.42UniProt (P97675)
Pfam (PF01663)
Rattus norvegicus (Rat)E-NPP 3,B10,Phosphodiesterase I beta,PD-Ibeta,Phosphodiesterase I/nucleotide pyrophosphatase 3,RB13-6 antigen
2C, D, E
(C, D, E)
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched424.43In PDB
GlyTouCan (G42666HT)
3F, G
(F, G)
beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched586.52In PDB
GlyTouCan (G15407YE)
4H, N
(A, B)
PHOSPHATE IONnon-polymer95.02Chemie (PO4)
5I, J, O, P
(A, B)
ZINC IONnon-polymer65.44Chemie (ZN)
6K, Q
(A, B)
CALCIUM IONnon-polymer40.12Chemie (CA)
7L, M, R, S
(A, B)
2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.24Chemie (NAG)
8T, U
(A, B)
waterwater18.0474Chemie (HOH)
Sequence modifications
A, B: 140 - 875 (UniProt: P97675)
PDBExternal DatabaseDetails
Ala 136-expression tag
Glu 137-expression tag
Thr 138-expression tag
Gly 139-expression tag
Val 201Met 201variant
Asn 596Ser 596variant
Arg 597Gly 597variant
Gly 876-expression tag
Thr 877-expression tag
Lys 878-expression tag
His 879-expression tag
His 880-expression tag
His 881-expression tag
His 882-expression tag
His 883-expression tag
His 884-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight170798.8
BranchedNumber of molecules5
Total formula weight2446.3
Non-Polymers*Number of molecules12
Total formula weight1416.6
All*Total formula weight174661.6
*Water molecules are not included.

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PDB entries from 2024-11-20

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