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6EQ1

Structure of the periplasmic binding protein (PBP) MelB (Atu4661) in complex with stachyose from agrobacterium fabrum C58

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(B, A)
Periplasmic alpha-galactoside-binding proteinpolymer68376359.62UniProt (A0A083ZM57)Rhizobium radiobacter (Agrobacterium tumefaciens)MelB
2C, D
(C, D)
beta-D-galactopyranose-(1-6)-beta-D-galactopyranose-(1-6)-alpha-D-glucopyranose-(1-2)-beta-D-fructofuranosebranched666.62In PDB
3E
(B)
TETRAETHYLENE GLYCOLnon-polymer194.21Chemie (PG4)
4DA, F, G, H, I...
(A, B)
DI(HYDROXYETHYL)ETHERnon-polymer106.18Chemie (PEG)
5EA, M, N, O, P...
(A, B)
1,2-ETHANEDIOLnon-polymer62.113Chemie (EDO)
6AA, BA, CA, FA, GA...
(B, A)
CALCIUM IONnon-polymer40.19Chemie (CA)
7JA, KA
(B, A)
waterwater18.0208Chemie (HOH)
Sequence modifications
B, A: 1 - 677 (UniProt: A0A083ZM57)
PDBExternal DatabaseDetails
His 678-expression tag
His 679-expression tag
His 680-expression tag
His 681-expression tag
His 682-expression tag
His 683-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight152719.2
BranchedNumber of molecules2
Total formula weight1333.2
Non-Polymers*Number of molecules31
Total formula weight2210.8
All*Total formula weight156263.1
*Water molecules are not included.

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PDB entries from 2026-01-14

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