6DWW
Hermes transposase deletion dimer complex with (A/T) DNA and Mn2+
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | Hermes transposase | polymer | 517 | 59033.6 | 1 | UniProt (Q25438) Pfam (PF10683) Pfam (PF05699) In PDB | Musca domestica (House fly) | |
| 2 | B | DNA (5'-D(*AP*GP*AP*GP*AP*AP*CP*AP*AP*CP*AP*AP*CP*AP*AP*G)-3') | polymer | 16 | 4942.3 | 1 | Musca domestica | ||
| 3 | C | DNA (25-MER) | polymer | 25 | 7628.9 | 1 | Musca domestica | ||
| 4 | D | DNA (5'-D(*GP*CP*GP*TP*GP*AP*A)-3') | polymer | 7 | 2162.4 | 1 | Musca domestica | ||
| 5 | A, C | MANGANESE (II) ION | non-polymer | 54.9 | 3 | Chemie (MN) | |||
| 6 | water | water | 18.0 | 74 | Chemie (HOH) |
Sequence modifications
A: 80 - 612 (UniProt: Q25438)
| PDB | External Database | Details |
|---|---|---|
| Gly 76 | - | expression tag |
| Ser 77 | - | expression tag |
| His 78 | - | expression tag |
| Met 79 | - | expression tag |
| Gly 128 | Lys 128 | conflict |
| - | Asp 497 | deletion |
| - | Ile 498 | deletion |
| - | Ser 499 | deletion |
| - | Thr 500 | deletion |
| - | Thr 501 | deletion |
| - | Ser 502 | deletion |
| - | Phe 503 | deletion |
| - | Phe 504 | deletion |
| - | Phe 505 | deletion |
| - | Pro 506 | deletion |
| - | Gln 507 | deletion |
| - | Leu 508 | deletion |
| - | Thr 509 | deletion |
| - | Gln 510 | deletion |
| - | Asn 511 | deletion |
| - | Asn 512 | deletion |
| - | Ser 513 | deletion |
| - | Arg 514 | deletion |
| - | Glu 515 | deletion |
| - | Pro 516 | deletion |
| Ser 519 | Cys 519 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 73767.2 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 164.8 | |
| All* | Total formula weight | 73932.1 |
